Mercurial > repos > iuc > gatk4_mutect2

comparison gatk4_Mutect2.xml @ 5:a39dba5ba783 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/gatk4 commit ff4bacd218035b7052ceadfadaec81dfd5d07b0e"
author iuc
date Fri, 14 Aug 2020 08:55:11 +0000
parents 33da9009065f
children 04253ade1697
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4:33da9009065f 5:a39dba5ba783
231 #end if 231 #end if
232 232
233 #if $advanced.max_unpruned_variants 233 #if $advanced.max_unpruned_variants
234 --max-unpruned-variants="$advanced.max_unpruned_variants" 234 --max-unpruned-variants="$advanced.max_unpruned_variants"
235 #end if 235 #end if
236 --allele-informative-reads-overlap-margin=="$advanced.allele_informative_reads_overlap_margin" 236 --allele-informative-reads-overlap-margin="$advanced.allele_informative_reads_overlap_margin"
237 --active-probability-threshold="$advanced.active_probability_threshold" 237 --active-probability-threshold="$advanced.active_probability_threshold"
238 --assembly-region-padding="$advanced.assembly_region_padding" 238 --assembly-region-padding="$advanced.assembly_region_padding"
239 --bam-writer-type="$advanced.bam_writer_type" 239 --bam-writer-type="$advanced.bam_writer_type"
240 --max-assembly-region-size="$advanced.max_assembly_region_size" 240 --max-assembly-region-size="$advanced.max_assembly_region_size"
241 --max-mnp-distance="$advanced.max_mnp_distance" 241 --max-mnp-distance="$advanced.max_mnp_distance"