Mercurial > repos > iuc > gatk2

diff print_reads.xml @ 4:e67da4f2c9bf draft

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author bgruening
date Sat, 18 Jan 2014 07:00:26 -0500
parents 28b85e2409ce
children b80301676614
line wrap: on
line diff
--- a/print_reads.xml	Mon Dec 02 10:37:45 2013 -0500
+++ b/print_reads.xml	Sat Jan 18 07:00:26 2014 -0500
@@ -18,9 +18,8 @@
     \$GATK2_SITE_OPTIONS
 
     ## according to http://www.broadinstitute.org/gatk/guide/article?id=1975
-    --num_cpu_threads_per_data_thread 8
+    --num_cpu_threads_per_data_thread \${GALAXY_SLOTS:-6}
 
-    @THREADS@
 
     #if $reference_source.reference_source_selector != "history":
         -R "${reference_source.ref_file.fields.path}"