--- a/reduce_reads.xml	Tue Mar 11 07:42:09 2014 -0400
+++ b/reduce_reads.xml	Wed Feb 18 11:36:59 2015 -0500
@@ -1,6 +1,7 @@
-<tool id="gatk2_reduce_reads" name="Reduce Reads" version="0.0.7">
+<tool id="gatk2_reduce_reads" name="Reduce Reads" version="@VERSION@.0">
   <description>in BAM files</description>
   <expand macro="requirements" />
+  <expand macro="version_command" />
   <macros>
     <import>gatk2_macros.xml</import>
   </macros>
@@ -154,7 +155,7 @@
 
 This walker will generated reduced versions of the BAM files that still follow the BAM spec and contain all the information necessary for the GSA variant calling pipeline. Some options allow you to tune in how much compression you want to achieve. The default values have been shown to reduce a typical whole exome BAM file 100x. The higher the coverage, the bigger the savings in file size and performance of the downstream tools.
 
-For more information on using read based compression in the GATK, see this `tool specific page &lt;http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_compression_reducereads_ReduceReads.html&gt;`_.
+.. For more information on using read based compression in the GATK, see this `tool specific page &lt;http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_compression_reducereads_ReduceReads.html&gt;`_.
 
 To learn about best practices for variant detection using GATK, see this `overview &lt;http://www.broadinstitute.org/gatk/guide/topic?name=best-practices&gt;`_.
 
@@ -223,4 +224,5 @@
 
 @CITATION_SECTION@
   </help>
+  <expand macro="citations" />
 </tool>