Mercurial > repos > iuc > gatk2

diff realigner_target_creator.xml @ 2:28b85e2409ce draft

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Uploaded
author bgruening
date Sat, 30 Nov 2013 10:36:47 -0500
parents c8752e31f496
children b80301676614
line wrap: on
line diff
--- a/realigner_target_creator.xml	Tue Nov 26 06:10:20 2013 -0500
+++ b/realigner_target_creator.xml	Sat Nov 30 10:36:47 2013 -0500
@@ -74,26 +74,26 @@
       </when>
     </conditional>
     
-    <repeat name="rod_bind" title="Binding for reference-ordered data" help="-known,--known &amp;lt;known&amp;gt;">
+    <repeat name="rod_bind" title="Known Variants" help="Using data sets of known variants (-known,--known &amp;lt;known&amp;gt;)">
         <conditional name="rod_bind_type">
-          <param name="rod_bind_type_selector" type="select" label="Binding Type">
+          <param name="rod_bind_type_selector" type="select" label="Variant Type">
             <option value="dbsnp" selected="True">dbSNP</option>
-            <option value="snps">SNPs</option>
+            <option value="snps">SNPs</option>  
             <option value="indels">INDELs</option>
             <option value="custom">Custom</option>
           </param>
           <when value="dbsnp">
-              <param name="input_rod" type="data" format="vcf" label="ROD file" />
+              <param name="input_rod" type="data" format="vcf" label="Variant file (VCF format)" />
           </when>
           <when value="snps">
-              <param name="input_rod" type="data" format="vcf" label="ROD file" />
+              <param name="input_rod" type="data" format="vcf" label="Variant file (VCF format)" />
           </when>
           <when value="indels">
-              <param name="input_rod" type="data" format="vcf" label="ROD file" />
+              <param name="input_rod" type="data" format="vcf" label="Variant file (VCF format)" />
           </when>
           <when value="custom">
-              <param name="custom_rod_name" type="text" value="Unknown" label="ROD Name"/>
-              <param name="input_rod" type="data" format="vcf" label="ROD file" />
+              <param name="custom_rod_name" type="text" value="Unknown" label="Customer's variant file" />
+              <param name="input_rod" type="data" format="vcf" label="Variant file (VCF format)" />
           </when>
         </conditional>
     </repeat>