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comparison variant_select.xml @ 6:b80301676614 draft

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author iuc
date Wed, 18 Feb 2015 11:36:59 -0500
parents c8752e31f496
children 0d369d08ad6e
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5:c2645201ffae 6:b80301676614
1 <tool id="gatk2_variant_select" name="Select Variants" version="0.0.7"> 1 <tool id="gatk2_variant_select" name="Select Variants" version="@VERSION@.0">
2 <description>from VCF files</description> 2 <description>from VCF files</description>
3 <expand macro="requirements" /> 3 <expand macro="requirements" />
4 <expand macro="version_command" />
4 <macros> 5 <macros>
5 <import>gatk2_macros.xml</import> 6 <import>gatk2_macros.xml</import>
6 </macros> 7 </macros>
7 <command interpreter="python"> 8 <command interpreter="python">
8 #from binascii import hexlify 9 #from binascii import hexlify
283 select_random_number int 0 Selects a number of variants at random from the variant track 284 select_random_number int 0 Selects a number of variants at random from the variant track
284 selectTypeToInclude List[Type] [] Select only a certain type of variants from the input file. Valid types are INDEL, SNP, MIXED, MNP, SYMBOLIC, NO_VARIATION. Can be specified multiple times 285 selectTypeToInclude List[Type] [] Select only a certain type of variants from the input file. Valid types are INDEL, SNP, MIXED, MNP, SYMBOLIC, NO_VARIATION. Can be specified multiple times
285 286
286 @CITATION_SECTION@ 287 @CITATION_SECTION@
287 </help> 288 </help>
289 <expand macro="citations" />
288 </tool> 290 </tool>