Mercurial > repos > iuc > gatk2

comparison tool_dependencies.xml @ 2:28b85e2409ce draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author bgruening
date Sat, 30 Nov 2013 10:36:47 -0500
parents 9ad15075b9fa
children b7ef18eaa9c9
comparison
equal deleted inserted replaced
1:c8752e31f496 2:28b85e2409ce
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0"> 3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> 4 <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable>
5 </set_environment> 5 </set_environment>
6 <!-- 6 <!--
7 Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call.
8 The intended use case was to prohibit GATK2 to collect and send data.
9 For example:
10
7 -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home 11 -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home
8 --> 12 -->
9 <set_environment version="1.0"> 13 <set_environment version="1.0">
10 <environment_variable action="set_to" name="GATK2_SITE_OPTIONS" /> 14 <environment_variable action="set_to" name="GATK2_SITE_OPTIONS" />
11 </set_environment> 15 </set_environment>