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comparison tool_dependencies.xml @ 11:0d369d08ad6e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk2 commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:47:06 -0400
parents 702c603e625e
children
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10:5db8d6815cf3 11:0d369d08ad6e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <set_environment version="1.0"> 3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> 4 <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable>
5 </set_environment> 5 </set_environment>
6 <!-- 6 <!--
7 Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call. 7 Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call.
8 The intended use case was to prohibit GATK2 to collect and send data. 8 The intended use case was to prohibit GATK2 to collect and send data.
9 For example: 9 For example:
10 10
11 -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home 11 -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home
12 --> 12 -->
13 <set_environment version="1.0"> 13 <set_environment version="1.0">
14 <environment_variable action="set_to" name="GATK2_SITE_OPTIONS"> </environment_variable> 14 <environment_variable action="set_to" name="GATK2_SITE_OPTIONS"> </environment_variable>
15 </set_environment> 15 </set_environment>