--- a/funannotate_compare.xml	Thu Nov 18 21:52:42 2021 +0000
+++ b/funannotate_compare.xml	Thu Nov 25 09:38:45 2021 +0000
@@ -87,9 +87,6 @@
                 <param argument="--bootstrap" type="integer" value="100" label="Number of boostrap replicates to run with RAxML" />
             </when>
         </conditional>
-
-        <!-- Need this to change path in the test funannotate_db -->
-        <param type="hidden" name="uglyTestingHack" value="" />
     </inputs>
     <outputs>
         <data name='output' format='html' label="${tool.name} on ${on_string}: report" />
@@ -98,7 +95,6 @@
         <test>
             <param name="input" value="compare/Genus_species.gbk,compare/Other_species.gbk,compare/Other_beast.gbk,compare/Yet_another.gbk" />
             <param name="database" value="2021-07-20-120000" />
-            <param name="outputs" value="gbk" />
             <conditional name="ml">
                 <param name="ml_method" value="raxml" />
             </conditional>