Mercurial > repos > iuc > funannotate_compare

comparison funannotate_compare.xml @ 7:d9300da9d409 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:34:44 +0000
parents f59072a52b68
children ea5944e50e36
comparison
equal deleted inserted replaced
6:d624f516aa1a 7:d9300da9d409
1 <tool id="funannotate_compare" name="Funannotate compare" profile="20.01" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="funannotate_compare" name="Funannotate compare" profile="20.01" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>annotations</description> 2 <description>annotations</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="biotools" />
6 <requirements> 7 <requirements>
7 <expand macro="requirements" /> 8 <expand macro="requirements" />
8 </requirements> 9 </requirements>
9 <version_command>funannotate check --show-versions</version_command> 10 <version_command>funannotate check --show-versions</version_command>
10 <command><![CDATA[ 11 <command><![CDATA[
25 26
26 #if $run_dnds in ['estimate', 'full']: 27 #if $run_dnds in ['estimate', 'full']:
27 --run_dnds ${run_dnds} 28 --run_dnds ${run_dnds}
28 #end if 29 #end if
29 30
30 ## TODO add --outgroup option some day (hard to get an up to date/customizable list) 31 ## need to add --outgroup option some day (hard to get an up to date/customizable list)
31 32
32 --go_fdr ${go_fdr} 33 --go_fdr ${go_fdr}
33 34
34 --heatmap_stdev ${heatmap_stdev} 35 --heatmap_stdev ${heatmap_stdev}
35 36