Mercurial > repos > iuc > funannotate_compare

comparison test-data/predict_augustus/Genus_species.discrepency.report.txt @ 0:5760412495fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:33:29 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:5760412495fb
1 Discrepancy Report Results
2
3 Summary
4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
6 DISC_FEATURE_COUNT:gene: 18 present
7 DISC_FEATURE_COUNT:CDS: 18 present
8 DISC_FEATURE_COUNT:mRNA: 18 present
9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
10 JOINED_FEATURES:32 features have joined locations.
11 NO_ANNOTATION:2 bioseqs have no features
12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
13 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
14 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
15 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
16 TECHNIQUE_NOT_TSA:4 technique are not set as TSA
17 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
18 MISSING_PROJECT:22 sequences do not include project.
19 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
20
21
22 Detailed Report
23
24 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
25
26 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
27 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
28 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 18 present
29 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 18 present
30 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 18 present
31 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
32 genome:sample (length 215740)
33 genome:sample2 (length 2030)
34 genome:sample3 (length 2100)
35 genome:sample4 (length 7560)
36
37 DiscRep_ALL:JOINED_FEATURES::32 features have joined locations.
38 DiscRep_SUB:JOINED_FEATURES::32 features have joined location but no exception
39 genome:CDS hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000002
40 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000017
41 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000017
42 genome:mRNA hypothetical protein (sample:2126-2199, 2258-3224, 3284-3490, 3549-3863) FUN_000002
43 genome:CDS hypothetical protein (sample4:c5494-4930, c4759-4248) FUN_000018
44 genome:mRNA hypothetical protein (sample4:c5494-4930, c4759-4248) FUN_000018
45 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4883) FUN_000003
46 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4883) FUN_000003
47 genome:CDS hypothetical protein (sample:c10557-10549, c10462-8696) FUN_000004
48 genome:mRNA hypothetical protein (sample:c10557-10549, c10462-8696) FUN_000004
49 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
50 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
51 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19533) FUN_000006
52 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19533) FUN_000006
53 genome:CDS hypothetical protein (sample:c35679-35675, c35655-35648, c35594-34843) FUN_000007
54 genome:mRNA hypothetical protein (sample:c35679-35675, c35655-35648, c35594-34843) FUN_000007
55 genome:CDS hypothetical protein (sample:40223-40396, 40659-41234) FUN_000008
56 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41234) FUN_000008
57 genome:mRNA hypothetical protein (sample:41267-41274, 41437-41444, 41707-42107) FUN_000009
58 genome:CDS hypothetical protein (sample:41267-41274, 41437-41444, 41707-42107) FUN_000009
59 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
60 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
61 genome:CDS hypothetical protein (sample:94727-94732, 94873-95016, 95449-95583) FUN_000011
62 genome:mRNA hypothetical protein (sample:94727-94732, 94873-95016, 95449-95583) FUN_000011
63 genome:CDS hypothetical protein (sample:133134-133142, 133209-134539, 134668-135510, 135569-136346) FUN_000012
64 genome:mRNA hypothetical protein (sample:133134-133142, 133209-134539, 134668-135510, 135569-136346) FUN_000012
65 genome:CDS hypothetical protein (sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416) FUN_000013
66 genome:mRNA hypothetical protein (sample:144294-144551, 149012-149244, 149367-149588, 149654-149897, 149952-150112, 150174-150248, 151966-152072, 152314-152429, 152496-152751, 153651-159010, 159150-164491, 167135-168360, 168722-169208, 169350-169416) FUN_000013
67 genome:CDS hypothetical protein (sample:192049-192067, 193549-193658, 194041-194455, 194518-194669) FUN_000014
68 genome:mRNA hypothetical protein (sample:192049-192067, 193549-193658, 194041-194455, 194518-194669) FUN_000014
69 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209044) FUN_000015
70 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209044) FUN_000015
71
72 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
73 genome:sample2 (length 2030)
74 genome:sample3 (length 2100)
75
76 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
77
78 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
79 genome:sample:"Annotated using 1.8.7"
80 genome:sample2:"Annotated using 1.8.7"
81 genome:sample3:"Annotated using 1.8.7"
82 genome:sample4:"Annotated using 1.8.7"
83
84 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
85 genome:sample (length 215740)
86 genome:sample2 (length 2030)
87 genome:sample3 (length 2100)
88 genome:sample4 (length 7560)
89
90 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
91 genome:sample (length 215740)
92 genome:sample2 (length 2030)
93 genome:sample3 (length 2100)
94 genome:sample4 (length 7560)
95
96 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
97 genome:sample (length 215740)
98 genome:sample2 (length 2030)
99 genome:sample3 (length 2100)
100 genome:sample4 (length 7560)
101
102 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
103 genome:sample (length 215740)
104 genome:sample2 (length 2030)
105 genome:sample3 (length 2100)
106 genome:sample4 (length 7560)
107
108 DiscRep_ALL:MISSING_PROJECT::22 sequences do not include project.
109 genome:sample (length 215740)
110 genome:ncbi:FUN_000001-T1 (length 124)
111 genome:ncbi:FUN_000002-T1 (length 520)
112 genome:ncbi:FUN_000003-T1 (length 220)
113 genome:ncbi:FUN_000004-T1 (length 591)
114 genome:ncbi:FUN_000005-T1 (length 135)
115 genome:ncbi:FUN_000006-T1 (length 662)
116 genome:ncbi:FUN_000007-T1 (length 254)
117 genome:ncbi:FUN_000008-T1 (length 249)
118 genome:ncbi:FUN_000009-T1 (length 138)
119 genome:ncbi:FUN_000010-T1 (length 90)
120 genome:ncbi:FUN_000011-T1 (length 94)
121 genome:ncbi:FUN_000012-T1 (length 986)
122 genome:ncbi:FUN_000013-T1 (length 4717)
123 genome:ncbi:FUN_000014-T1 (length 231)
124 genome:ncbi:FUN_000015-T1 (length 478)
125 genome:sample2 (length 2030)
126 genome:sample3 (length 2100)
127 genome:sample4 (length 7560)
128 genome:ncbi:FUN_000016-T1 (length 124)
129 genome:ncbi:FUN_000017-T1 (length 520)
130 genome:ncbi:FUN_000018-T1 (length 358)
131
132 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
133 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
134 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
135 genome:sample (length 215740)
136 genome:sample2 (length 2030)
137 genome:sample3 (length 2100)
138 genome:sample4 (length 7560)
139