Mercurial > repos > iuc > filtlong
annotate filtlong.xml @ 4:428fd2cee5d9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
| author | iuc |
|---|---|
| date | Tue, 23 Sep 2025 16:33:00 +0000 |
| parents | e6d48d485920 |
| children |
| rev | line source |
|---|---|
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3
e6d48d485920
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit adf0341da7282c80c25336ae03130b2dc44c65bb"
iuc
parents:
2
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changeset
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1 <tool id="filtlong" name="filtlong" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
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0
f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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2 <description>Filtering long reads by quality</description> |
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2
924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
parents:
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3 <macros> |
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924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
parents:
1
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4 <import>macros.xml</import> |
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924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
parents:
1
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5 </macros> |
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4
428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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6 <expand macro="biotools" /> |
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2
924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
parents:
1
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changeset
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7 <expand macro="requirements"/> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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8 <version_command>filtlong --version</version_command> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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changeset
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9 <command detect_errors="exit_code"><![CDATA[ |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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10 filtlong |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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11 #if $output_thresholds.target_bases: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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12 --target_bases '$output_thresholds.target_bases' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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changeset
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13 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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14 #if $output_thresholds.keep_percent: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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15 --keep_percent '$output_thresholds.keep_percent' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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16 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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17 #if $output_thresholds.min_length: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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18 --min_length '$output_thresholds.min_length' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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19 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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20 #if $output_thresholds.min_mean_q: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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21 --min_mean_q '$output_thresholds.min_mean_q' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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22 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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23 #if $output_thresholds.min_window_q: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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24 --min_window_q '$output_thresholds.min_window_q' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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25 #end if |
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3
e6d48d485920
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit adf0341da7282c80c25336ae03130b2dc44c65bb"
iuc
parents:
2
diff
changeset
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26 #if $output_thresholds.max_length: |
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e6d48d485920
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit adf0341da7282c80c25336ae03130b2dc44c65bb"
iuc
parents:
2
diff
changeset
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27 --max_length '$output_thresholds.max_length' |
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e6d48d485920
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit adf0341da7282c80c25336ae03130b2dc44c65bb"
iuc
parents:
2
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changeset
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28 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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29 #if $external_references.assembly: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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30 --assembly '$external_references.assembly' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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changeset
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31 #end if |
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4
428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
changeset
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32 #if $external_references.short_1: |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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33 --short_1 '$external_references.short_1' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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34 #end if |
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4
428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
changeset
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35 #if $external_references.short_2: |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
changeset
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36 --short_2 '$external_references.short_2' |
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0
f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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37 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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38 --length_weight '$score_weights.length_weight' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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39 --mean_q_weight '$score_weights.mean_q_weight' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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40 --window_q_weight '$score_weights.window_q_weight' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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changeset
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41 $read_manipulation.trim |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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42 #if $read_manipulation.split: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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43 --split '$read_manipulation.split' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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44 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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45 #if $other.window_size: |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
diff
changeset
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46 --window_size '$other.window_size' |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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47 #end if |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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48 '$input_file' > output.fastq |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
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49 ]]></command> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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50 <inputs> |
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924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
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51 <param name="input_file" type="data" format="fastqsanger,fastqsanger.gz" label="Input FASTQ" help="FASTQ of input reads"/> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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52 <section name="output_thresholds" title="Output thresholds"> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
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53 <param argument="--target_bases" type="text" optional="True" label="Total bases" help="Keep only the best reads up to this many total bases (unit suffixes: k, kb, m, mb, g, gb)."> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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54 <validator type="regex" message="Invalid characters in field">(?i)^[0-9]+(?:[KMG](?:B)?)?$</validator> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
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55 </param> |
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0
f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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56 <param argument="--keep_percent" type="float" min="0" max="100" optional="True" label="Keep percentage" help="Keep only this percentage of the best reads (measured by bases)"/> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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57 <param argument="--max_length" type="text" min="0" optional="True" label="Max. length" help="Maximum length threshold (unit suffixes: k, kb, m, mb, g, gb)"> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
changeset
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58 <validator type="regex" message="Invalid characters in field">(?i)^[0-9]+(?:[KMG](?:B)?)?$</validator> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
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59 </param> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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60 <param argument="--min_length" type="text" min="0" optional="True" label="Min. length" help="Minimum length threshold (unit suffixes: k, kb, m, mb, g, gb)"> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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61 <validator type="regex" message="Invalid characters in field">(?i)^[0-9]+(?:[KMG](?:B)?)?$</validator> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
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62 </param> |
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0
f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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63 <param argument="--min_mean_q" type="float" min="0" optional="True" label="Min. mean quality" help="Minimum mean quality threshold"/> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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64 <param argument="--min_window_q" type="float" min="0" optional="True" label="Min. window quality" help="Minimum window quality threshold"/> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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65 </section> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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66 <section name="external_references" title="External references"> |
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2
924cf0c5b51e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit fe7fac8c3287f5de0fe92d20fc39f71045240889"
iuc
parents:
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67 <param argument="--assembly" type="data" format="fasta,fasta.gz" optional="True" label="Reference assembly" help="Reference assembly in FASTA format"/> |
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4
428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
3
diff
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68 <param argument="--short_1" type="data" format="fastqsanger,fastqsanger.gz" optional="True" label="Reference Illumina read" help="Reference Illumina reads in FASTQ format"/> |
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428fd2cee5d9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/filtlong commit 5875d08292df3ceac45962dcc1790a36de9dcf9a
iuc
parents:
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69 <param argument="--short_2" type="data" format="fastqsanger,fastqsanger.gz" optional="True" label="Reference Illumina read" help="Reference Illumina reads in FASTQ format"/> |
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0
f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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70 </section> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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71 <section name="score_weights" title="Score weights"> |
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f7c6dcf60964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/filtlong commit 8c25a8b21de04f75cdf12a33d8d9cfe2d15ed13a
iuc
parents:
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72 <param argument="--length_weight" type="float" min="0" value="1" optional="True" label="Weight length score" help="Weight given to the length score (default: 1)"/> |
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73 <param argument="--mean_q_weight" type="float" min="0" value="1" optional="True" label="Weight mean quality" help="Weight given to the mean quality score (default: 1)"/> |
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74 <param argument="--window_q_weight" type="float" min="0" value="1" optional="True" label="Weight window quality" help="Weight given to the window quality score (default: 1)"/> |
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75 </section> |
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76 <section name="read_manipulation" title="Read manipulation"> |
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77 <param argument="--trim" type="boolean" checked="false" truevalue="--trim" falsevalue="" label="Trim non-k-mer-matching" help="Trim non-k-mer-matching bases from start/end of reads"/> |
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78 <param argument="--split" type="text" min="0" optional="True" label="Split at nr. of bases" help="split reads at this many (or more) consecutive non-k-mer-matching bases"> |
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79 <validator type="regex" message="Invalid characters in field">(?i)^[0-9]+(?:[KMG](?:B)?)?$</validator> |
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80 </param> |
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81 </section> |
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82 <section name="other" title="Other"> |
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83 <param argument="--window_size" type="integer" min="0" value="250" optional="True" label="Sliding window size" help="size of sliding window used when measuring window quality (default: 250)"/> |
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84 </section> |
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85 </inputs> |
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86 <outputs> |
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87 <data name="outfile" format="fastqsanger" from_work_dir="output.fastq" label="${tool.name} on ${on_string}: Filtered FASTQ"/> |
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88 </outputs> |
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89 <tests> |
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90 <test expect_num_outputs="1"> |
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91 <param name="input_file" ftype="fastqsanger" value="test.fastq.gz"/> |
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92 <section name="output_thresholds"> |
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93 <param name="min_length" value="1000"/> |
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94 <param name="keep_percent" value="50"/> |
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95 <param name="target_bases" value="500mb"/> |
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96 </section> |
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97 <output name="outfile" ftype="fastqsanger" file="output.fastq"/> |
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98 </test> |
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99 <test expect_num_outputs="1"> |
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100 <param name="input_file" ftype="fastqsanger" value="test.fastq.gz"/> |
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101 <section name="external_references"> |
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102 <param name="assembly" ftype="fasta.gz" value="test_reference.fasta.gz"/> |
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103 <param name="short_1" ftype="fastqsanger.gz" value="test_reference_1.fastq.gz"/> |
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104 <param name="short_2" ftype="fastqsanger.gz" value="test_reference_2.fastq.gz"/> |
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105 </section> |
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106 <section name="output_thresholds"> |
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107 <param name="min_length" value="1000"/> |
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108 <param name="keep_percent" value="90"/> |
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109 <param name="target_bases" value="500mb"/> |
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110 </section> |
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111 <section name="read_manipulation"> |
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112 <param name="trim" value="True"/> |
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113 <param name="split" value="500"/> |
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114 </section> |
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115 <output name="outfile" ftype="fastqsanger" file="output_reference.fastq"/> |
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116 </test> |
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117 <test expect_num_outputs="1"> |
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118 <param name="input_file" ftype="fastqsanger" value="test.fastq.gz"/> |
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119 <section name="output_thresholds"> |
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120 <param name="max_length" value="5000"/> |
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121 </section> |
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122 <output name="outfile" ftype="fastqsanger" file="output_max_length.fastq"/> |
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123 </test> |
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124 </tests> |
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125 <help><![CDATA[ |
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126 Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. |
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127 ]]></help> |
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128 <expand macro="citations"/> |
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129 </tool> |