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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fileidentification commit bb234555cae70fdd9be475415855a7a03c4139df
author iuc
date Thu, 30 Oct 2025 16:52:16 +0000
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1 <tool id="fileidentification" name="File Format Identification" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.1">
2 <description>Check multimedia files if they are corrupt or duplicated</description>
3 <macros><import>macros.xml</import></macros>
4 <expand macro="requirements"/>
5 <command detect_errors="exit_code"><![CDATA[
6 unzip '$input' -d input_dir &&
7 /app/.venv/bin/python /app/identify.py ./input_dir &&
8 /app/.venv/bin/python /app/identify.py ./input_dir --inspect > results.txt
9 ]]></command>
10 <inputs>
11 <param type="data" name="input" format="zip" label="ZIP containing the files to be analysed"/>
12 </inputs>
13 <outputs>
14 <data name="out" format="txt" from_work_dir="results.txt" label="${tool.name} on ${on_string}"/>
15 </outputs>
16 <tests>
17 <test expect_num_outputs="1">
18 <param name="input" value="test-data.zip"/>
19 <output name="out" ftype="txt" file="output_results_linux_gh_action.txt"/>
20 </test>
21 </tests>
22 <help><![CDATA[
23 Do you have a huge number of multimedia files and you don't know if they are corrupt,
24 or if they have the correct extension?
25 This tool:
26
27 - gives you an overview of what file types there are
28 - checks if the extension of the files match their content
29 - checks if there are any duplicates
30 - checks if the content of the files is intact
31
32 Input: A ZIP containing the files to be analysed (may be a nested folder structure)
33 Output: A report in plain text form
34
35 A possible use case are digital preservation workflows,
36 where you want to make sure that you only preserve high-quality files for the future.
37
38 Supported file types: A wide range of image formats (pixel and vector), videos, audios, pdf, MS Office.
39
40 Note: The original fileidentification tool is more feature-rich.
41 In particular, it offers bulk conversion of files, which is currently not supported on Galaxy.
42
43 Find more information in `the GitHub repo <https://github.com/dasch-swiss/fileidentification>`_.
44 ]]></help>
45 <citations>
46 <citation type="bibtex">
47 @misc{githubfileidentification,
48 author = {Swiss National Data and Service Center for the Humanities},
49 year = {2025},
50 title = {Fileidentification - A CLI to Identify Multimedia File Formats and Bulk Convert Files},
51 publisher = {GitHub},
52 journal = {GitHub repository},
53 url = {https://github.com/dasch-swiss/fileidentification},
54 }</citation>
55 </citations>
56 </tool>