Mercurial > repos > iuc > feelnc

diff feelnc_wrapper.xml @ 5:50718d48252c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/feelnc commit 8913264abbcee238b5ef81268d111db98c942bfe"
author: iuc
date: Thu, 23 Sep 2021 18:17:55 +0000
parents: fbe90d8cf66f
children: 3063b598f93f
--- a/feelnc_wrapper.xml	Tue Aug 31 08:08:19 2021 +0000
+++ b/feelnc_wrapper.xml	Thu Sep 23 18:17:55 2021 +0000
@@ -9,11 +9,12 @@
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
 export FEELNCPATH=\$(dirname \$(command -v FEELnc_pipeline.sh))/../ &&
-
+## Symlink the genome FASTA to the working directory to avoid writing .index to inputdir
+ln -s '$genome' genome_fa &&
 FEELnc_pipeline.sh
 --candidate='${candidate}'
 --reference='${reference}'
---genome='${genome}'
+--genome=genome_fa
 --outname='candidate_lncRNA'
 --outdir='out_feelnc'