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annotate tool_dependencies.xml @ 0:7aca2d8f244f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
author iuc
date Wed, 13 Jan 2016 17:55:27 -0500
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7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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1 <?xml version="1.0"?>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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2 <tool_dependency>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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3 <package name="FastQC" version="0.11.4">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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4 <install version="1.0">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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5 <actions_group>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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6 <actions os="linux" architecture="x86_64">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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8 <action type="move_directory_files">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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9 <source_directory>../FastQC</source_directory>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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12 </action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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13 </actions>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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14 <actions os="darwin" architecture="x86_64">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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15 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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16 <action type="shell_command">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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17 hdiutil attach fastqc_v0.11.4.dmg &amp;&amp;
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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18 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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19 hdiutil detach /Volumes/FastQC
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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20 </action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
parents:
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21 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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22 </actions>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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23 <action type="set_environment">
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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25 </action>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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26 </actions_group>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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27 </install>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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28 </package>
7aca2d8f244f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit a81a31319aba09624ea11bb4e41b782ae95dc1c4-dirty
iuc
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29 </tool_dependency>