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comparison fastq_screen.xml @ 1:3480daf4ed27 draft

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author iuc
date Fri, 16 May 2014 19:26:18 -0400
parents 8a8adbf98ecc
children 81a0c1c27ec8
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0:8a8adbf98ecc 1:3480daf4ed27
1 <tool id="fastq_screen" name="fastq_screen" version="0.4.2"> 1 <tool id="fastq_screen" name="fastq_screen" version="0.4.2">
2 <description>Screen for contamination</description> 2 <description>Screen for contamination</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.4.2">fastq_screen</requirement> 4 <requirement type="package" version="0.4.2">fastq_screen</requirement>
5 <requirement type="package" version="2.1.0">bowtie2</requirement> 5 <requirement type="package" version="2.1.0">package_bowtie2</requirement>
6 </requirements> 6 </requirements>
7 <command> 7 <command>
8 fastq_screen --aligner="bowtie2" --outdir="." --conf="$fastqrunconf" 8 fastq_screen --aligner="bowtie2" --outdir="." --conf="$fastqrunconf"
9 #if $sampN &gt; 0: 9 #if $sampN &gt; 0:
10 --subset "$sampN" 10 --subset "$sampN"