--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Sat Nov 16 18:43:39 2024 +0000
@@ -0,0 +1,42 @@
+<macros>
+    <token name="@TOOL_VERSION@">3.0.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">fastq-dl</requirement>
+        </requirements>
+    </xml>
+    <token name="@FASTQ_DL_FOR_LOOP@"><![CDATA[
+        for accessionid in "\${accessionsarr[@]}"; do
+            fastq-dl --accession "\$accessionid"
+            --provider ena
+            --only-provider
+            $only_download_metadata
+            $group_by_experiment
+            $group_by_sample
+            &&
+            mv fastq-run-info.tsv logs/"\$accessionid"-fastq-run-info.tsv > /dev/null 2>&1 || true;
+        done
+    ]]></token>
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                <![CDATA[
+			        @software{petit2024fastq-dl,
+                        author       = {Robert A. Petit III and Micheal B. Hall and Gerry Tonkin-Hill and Jie Zhu and Timothy D. Read},
+                        title        = {{fastq-dl}: efficiently download FASTQ files from SRA or ENA repositories},
+                        version      = {2.0.2},
+                        year         = {2024},
+                        url          = {https://github.com/rpetit3/fastq-dl},
+                        note         = {Accessed: 2024-10-31}
+                    }
+			        ]]>
+        </citation>
+        </citations>
+    </xml>
+    <xml name="creators">
+        <creator>
+            <person givenName="Rand" familyName="Zoabi" url="https://github.com/RZ9082" identifier="https://orcid.org/0009-0000-2501-8053" />
+        </creator>
+    </xml>
+</macros>