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comparison macros.xml @ 2:0095a278a085 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_dl commit 3253434cee1e88dcab77c1cc99264900c78eadb9
author iuc
date Thu, 13 Nov 2025 13:33:35 +0000
parents f1a958f3e3f6
children
comparison
equal deleted inserted replaced
1:f1a958f3e3f6 2:0095a278a085
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">3.0.1</token> 2 <token name="@TOOL_VERSION@">3.0.1</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">fastq-dl</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">fastq-dl</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
11 fastq-dl --accession "\$accessionid" 11 fastq-dl --accession "\$accessionid"
12 --provider ena 12 --provider ena
13 --only-provider 13 --only-provider
14 $only_download_metadata 14 $only_download_metadata
15 $group_by_experiment 15 $group_by_experiment
16 $group_by_sample 16 $group_by_sample;
17 && 17 exit_code=\$? ;
18 if [ \$exit_code -ne 0 ]; then
19 echo "fastq-dl failed for accession: \${accessionid}" >&2 ;
20 exit \$exit_code ;
21 break ;
22 else
18 mv fastq-run-info.tsv logs/"\$accessionid"-fastq-run-info.tsv > /dev/null 2>&1 || true; 23 mv fastq-run-info.tsv logs/"\$accessionid"-fastq-run-info.tsv > /dev/null 2>&1 || true;
24 fi ;
19 done 25 done
20 ]]></token> 26 ]]></token>
21 <xml name="citations"> 27 <xml name="citations">
22 <citations> 28 <citations>
23 <citation type="bibtex"> 29 <citation type="bibtex">