Mercurial > repos > iuc > fastp

diff fastp.xml @ 7:2fcdbf78caf9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 249269561e1d3a767371c154677e5dd59147f7d7
author iuc
date Wed, 16 Jan 2019 04:01:17 -0500
parents 7c49e331a737
children 1eb1895ab19c
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--- a/fastp.xml	Thu Aug 23 02:53:19 2018 -0400
+++ b/fastp.xml	Wed Jan 16 04:01:17 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="fastp" name="fastp" version="@WRAPPER_VERSION@.3">
+<tool id="fastp" name="fastp" version="@WRAPPER_VERSION@">
     <description>- fast all-in-one preprocessing for FASTQ files</description>
     <macros>
         <import>macros.xml</import>
@@ -72,6 +72,8 @@
 #if str($single_paired.single_paired_selector).startswith('paired'):
     #if str($single_paired.adapter_trimming_options.adapter_sequence2):
         --adapter_sequence_r2 '$single_paired.adapter_trimming_options.adapter_sequence2'
+    #else
+        --detect_adapter_for_pe
     #end if
 #end if
 
@@ -342,7 +344,7 @@
             </output>
         </test>
         <!-- Ensure paired collection works -->
-        <test expect_num_outputs="3">
+        <test expect_num_outputs="4">
             <param name="single_paired_selector" value="paired_collection"/>
             <param name="paired_input">
                 <collection type="paired">