Mercurial > repos > iuc > fastp

diff fastp.xml @ 18:046512eda8c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 039359757ad615f57028cab966b2b76f8ce8a199
author iuc
date Fri, 13 Jun 2025 12:05:12 +0000
parents d6c9f863a9db
children 7e30f4d7077d
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line diff
--- a/fastp.xml	Tue Jun 03 08:48:55 2025 +0000
+++ b/fastp.xml	Fri Jun 13 12:05:12 2025 +0000
@@ -554,7 +554,8 @@
             </output>
         </test>
         <!-- 11. Test fastqsanger files with different length -->
-        <test expect_exit_code="255" expect_failure="true">
+        <!-- Adapted for the updated version of fastp, which now ignores unmatched reads and continues filtering as expected -->
+        <test expect_num_outputs="4">
             <conditional name="single_paired">
                 <param name="single_paired_selector" value="paired_collection"/>
                 <param name="paired_input">
@@ -564,6 +565,18 @@
                     </collection>
                 </param>
             </conditional>
+            <section name="output_options">
+                <param name="report_json" value="False"/>
+            </section>
+            <output name="report_html">
+                <assert_contents>
+                    <has_text text="fastp report"/>
+                </assert_contents>
+            </output>
+            <output_collection name="output_paired_coll" type="paired">
+                <element name="forward" value="out_filtered_1.fq" ftype="fastqsanger"/>
+                <element name="reverse" value="out_filtered_2.fq" ftype="fastqsanger"/>
+            </output_collection>
         </test>
         <!-- 12. Test merge reads in combination with paired -->
         <test expect_num_outputs="7">