Mercurial > repos > iuc > extract_metaphlan_database

diff formatoutput.py @ 5:b81c6e597cf1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
author iuc
date Mon, 27 Feb 2023 06:59:04 +0000
parents b76ebe7a1746
children
line wrap: on
line diff
--- a/formatoutput.py	Wed Feb 02 21:59:04 2022 +0000
+++ b/formatoutput.py	Mon Feb 27 06:59:04 2023 +0000
@@ -57,9 +57,11 @@
                 # skip headers
                 if line.startswith("#"):
                     continue
-                # skip UNKNOWN lines in Predicted taxon relative abundances
-                if "UNKNOWN" in line:
+
+                # skip UNKNOWN (v3) or UNCLASSIFIED (v4) lines in predicted taxon relative abundances
+                if "UNKNOWN" in line or 'UNCLASSIFIED' in line:
                     continue
+
                 # spit lines
                 split_line = line[:-1].split('\t')
                 taxo_n = split_line[0].split('|')