Mercurial > repos > iuc > extract_metaphlan_database

diff formatoutput.py @ 2:b76ebe7a1746 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f1c6f4fe1e572ace84cf9106bc253603f55aac55"
author iuc
date Mon, 14 Jun 2021 12:43:30 +0000
parents 7c4605199dfd
children b81c6e597cf1
line wrap: on
line diff
--- a/formatoutput.py	Mon May 17 20:04:57 2021 +0000
+++ b/formatoutput.py	Mon Jun 14 12:43:30 2021 +0000
@@ -57,7 +57,9 @@
                 # skip headers
                 if line.startswith("#"):
                     continue
-
+                # skip UNKNOWN lines in Predicted taxon relative abundances
+                if "UNKNOWN" in line:
+                    continue
                 # spit lines
                 split_line = line[:-1].split('\t')
                 taxo_n = split_line[0].split('|')