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comparison exonerate.xml @ 2:29d1f9b7200b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/exonerate commit ce91cc3863ddfb33fd8415b3239c6b3284ed591f
author iuc
date Fri, 28 Jun 2019 11:20:33 -0400
parents 3222a35ab2ae
children 0d6a5769f901
comparison
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1:3222a35ab2ae 2:29d1f9b7200b
1 <tool id="exonerate" name="Exonerate" profile="16.04" version="@VERSION@"> 1 <tool id="exonerate" name="Exonerate" profile="16.04" version="@VERSION@+galaxy1">
2 <description>pairwise sequence comparison</description> 2 <description>pairwise sequence comparison</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
37 #elif str($outformat) == "targetgff" 37 #elif str($outformat) == "targetgff"
38 --showalignment no --showvulgar no --showtargetgff yes --showquerygff no > '${output_gff}' 38 --showalignment no --showvulgar no --showtargetgff yes --showquerygff no > '${output_gff}'
39 #elif str($outformat) == "querygff" 39 #elif str($outformat) == "querygff"
40 --showalignment no --showvulgar no --showtargetgff no --showquerygff yes > '${output_gff}' 40 --showalignment no --showvulgar no --showtargetgff no --showquerygff yes > '${output_gff}'
41 #end if 41 #end if
42
43 --cores \${GALAXY_SLOTS:-1}
42 ]]></command> 44 ]]></command>
43 45
44 <inputs> 46 <inputs>
45 <param argument="--query" type="data" format="fasta" label="Select the query sequence(s) in fasta" /> 47 <param argument="--query" type="data" format="fasta" label="Select the query sequence(s) in fasta" />
46 48