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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit 6f9ce1aba91681e831f2649fb36b74cc3d572eb3
author iuc
date Fri, 24 Oct 2025 08:03:03 +0000
parents 7f669682f4ac
children
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YAML -------------
ENA_experiment:
  0:
    alias: exp_test_alias_001
    design_description: Lot's of coffe and magic
    insert_size: 250.0
    instrument_model: NextSeq 500
    library_construction_protocol: Illumina COVIDSeq Test Kit
    library_layout: PAIRED
    library_name: Cov51
    library_selection: RT-PCR
    library_source: VIRAL RNA
    library_strategy: AMPLICON
    platform: ILLUMINA
    sample_alias: sample_alias_001
    study_alias: study_alias_001
    title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
  1:
    alias: exp_test_alias_002
    design_description: Lot's of coffe and magic
    insert_size: 250.0
    instrument_model: NextSeq 500
    library_construction_protocol: Illumina COVIDSeq Test Kit
    library_layout: PAIRED
    library_name: Cov51
    library_selection: RT-PCR
    library_source: VIRAL RNA
    library_strategy: AMPLICON
    platform: ILLUMINA
    sample_alias: phiX2
    study_alias: study_alias_001
    title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
ENA_run:
  2:
    alias: run_alias_001
    experiment_alias: exp_test_alias_001
    file_format: FASTQ
    file_name: run001.fastq.gz
ENA_sample:
  2:
    alias: sample_alias_001
    collecting institution: Umbrella Corp.
    collection date: '2021-05-03'
    collector name: "John Doe"
    definition for seropositive sample: ''
  2:
    alias: phiX2
    collecting institution: Umbrella Corp.
    collection date: '2021-05-03'
    collector name: "John Doe"
    definition for seropositive sample: ''
ENA_study:
  2:
    alias: study_alias_001
    study_abstract: "Help"
    study_type: Whole Genome Sequencing
    title: Whole genome sequencing of SARS-CoV-2
YAML -------------

Printing receipt to ./receipt.xml

Submission was done successfully

Study accession details:
study_alias_001	FAKE0001	2011-01-16T10:52:06.497+01:00	added

Sample accession details:
sample_alias_001	FAKESAMP001	2011-01-16T10:52:06.497+01:00	added
phiX2	FAKESAMP002	2011-01-16T10:52:06.497+01:00	added

Saving updates in new tsv tables::
save updates in ./submission_files/studies_updated.tsv
save updates in ./submission_files/samples_updated.tsv
save updates in ./submission_files/experiments_updated.tsv
save updates in ./submission_files/runs_updated.tsv
action_option	add
center_name	Gent test