Mercurial > repos > iuc > ena_webin_cli
diff README.rst @ 0:7f669682f4ac draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ena_webin_cli commit abb15194a196267142d88b9348facf9e85e601ef
| author | iuc |
|---|---|
| date | Mon, 06 Oct 2025 12:13:07 +0000 |
| parents | |
| children | 1090ae5e7b29 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Oct 06 12:13:07 2025 +0000 @@ -0,0 +1,39 @@ +Webin CLI wrapper +====================== +the submission of genome assemblies using the +[Webin-cli](https://github.com/enasequence/webin-cli) + +This is a Galaxy wrapper for `webin cli <https://github.com/enasequence/webin-cli>`__ tool from `ENA <https://www.ebi.ac.uk/ena/browser/home>`__. + + +Setting up credentials on Galaxy +-------------------------------- + +The admin of the server can set up global credentials through a file +with the format: + +.. code-block:: yaml + + username: webin_id + password: webin_password + +The path to this file must be exported as an environment variable called +$GALAXY_ENA_SECRETS + +Alternatively, the admin can enable users to set their own credentials +for this tool. To enable it, make sure the file +``config/user_preferences_extra_conf.yml`` has the following section: + +.. code-block:: yaml + + ena_webin_account: + description: Your ENA Webin account details + inputs: + - name: webin_id + label: ENA Webin ID + type: text + required: False + - name: password + label: Password + type: password + required: False
