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comparison ena_upload.xml @ 9:69fc9c4a68b7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload commit 6770d277b4136b4068293c4260022d4ae33b2379
author iuc
date Thu, 10 Nov 2022 15:15:20 +0000
parents f06750b74505
children e7995727674f
comparison
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8:f06750b74505 9:69fc9c4a68b7
1 <tool id="ena_upload" name="ENA Upload tool" version="@VERSION@" profile="20.01" license="MIT"> 1 <tool id="ena_upload" name="ENA Upload tool" version="@VERSION@" profile="20.01" license="MIT">
2 <macros> 2 <macros>
3 <token name="@VERSION@">0.6.0</token> 3 <token name="@VERSION@">0.6.1</token>
4 <import>samples_macros.xml</import> 4 <import>samples_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@VERSION@">ena-upload-cli</requirement> 7 <requirement type="package" version="@VERSION@">ena-upload-cli</requirement>
8 </requirements> 8 </requirements>
638 </output> 638 </output>
639 <output name="studies_table_out"> 639 <output name="studies_table_out">
640 <assert_contents> 640 <assert_contents>
641 <has_n_lines n="2"/> 641 <has_n_lines n="2"/>
642 <has_n_columns n="8"/> 642 <has_n_columns n="8"/>
643 <has_line_matching expression="alias\tstatus\taccession\ttitle\tstudy_type\tstudy_abstract\tpubmed_id\tsubmission_date"/> 643 <has_line_matching expression="alias\tstatus\ttitle\tstudy_type\tstudy_abstract\tpubmed_id\taccession\tsubmission_date"/>
644 </assert_contents> 644 </assert_contents>
645 </output> 645 </output>
646 <output name="samples_table_out"> 646 <output name="samples_table_out">
647 <assert_contents> 647 <assert_contents>
648 <has_n_lines n="2"/> 648 <has_n_lines n="2"/>
651 </output> 651 </output>
652 <output name="runs_table_out"> 652 <output name="runs_table_out">
653 <assert_contents> 653 <assert_contents>
654 <has_n_lines n="3"/> 654 <has_n_lines n="3"/>
655 <has_n_columns n="8"/> 655 <has_n_columns n="8"/>
656 <has_line_matching expression="alias\tstatus\taccession\texperiment_alias\tfile_name\tfile_format\tfile_checksum\tsubmission_date"/> 656 <has_line_matching expression="alias\tstatus\texperiment_alias\tfile_name\tfile_format\taccession\tsubmission_date\tfile_checksum"/>
657 </assert_contents> 657 </assert_contents>
658 </output> 658 </output>
659 </test> 659 </test>
660 <!--Test 6: RUN failing build tables from user input fields NON-VIRAL samples--> 660 <!--Test 6: RUN failing build tables from user input fields NON-VIRAL samples-->
661 <test expect_failure="true"> 661 <test expect_failure="true">