Mercurial > repos > iuc > drep_dereplicate

comparison drep_dereplicate.xml @ 4:8a5ddbd5895f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/drep commit 91d5bae878afa54d8264c1ca89c79b2d26ef35ad
author iuc
date Wed, 15 Mar 2023 11:04:06 +0000
parents 5482fd8d4418
children 055649d1378e
comparison
equal deleted inserted replaced
3:5482fd8d4418 4:8a5ddbd5895f
3 <expand macro="biotools" /> 3 <expand macro="biotools" />
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"> 7 <expand macro="requirements">
8 <requirement type="package" version="1.2.0">checkm-genome</requirement> 8 <requirement type="package" version="1.2.2">checkm-genome</requirement>
9 </expand> 9 </expand>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 @PREPARE_GENOMES@ 11 @PREPARE_GENOMES@
12 dRep dereplicate outdir 12 dRep dereplicate outdir
13 @GENOMES@ 13 @GENOMES@
54 <test expect_num_outputs="8"> 54 <test expect_num_outputs="8">
55 <expand macro="test_integer_inputs"/> 55 <expand macro="test_integer_inputs"/>
56 <expand macro="test_default_filtering_options"/> 56 <expand macro="test_default_filtering_options"/>
57 <expand macro="test_default_quality_assessment_options"/> 57 <expand macro="test_default_quality_assessment_options"/>
58 <expand macro="test_default_comparison_clustering_options"/> 58 <expand macro="test_default_comparison_clustering_options"/>
59 <expand macro="test_extra_weight_table_scoring_options"/>
60 <expand macro="test_default_warning_options"/>
61 <expand macro="test_default_select_drep_outputs"/>
62 <expand macro="test_log_output">
63 <has_text text="dRep dereplicate finished" />
64 </expand>
65 </test>
66 <test expect_num_outputs="8">
67 <expand macro="test_string_inputs"/>
68 <expand macro="test_default_filtering_options"/>
69 <expand macro="test_default_quality_assessment_options"/>
70 <expand macro="test_default_comparison_clustering_options"/>
59 <expand macro="test_default_scoring_options"/> 71 <expand macro="test_default_scoring_options"/>
60 <expand macro="test_default_warning_options"/> 72 <expand macro="test_default_warning_options"/>
61 <expand macro="test_default_select_drep_outputs"/> 73 <expand macro="test_default_select_drep_outputs"/>
62 <expand macro="test_log_output"> 74 <expand macro="test_log_output">
63 <has_text text="dRep dereplicate finished" /> 75 <has_text text="dRep dereplicate finished" />