dimet_timecourse_analysis: macros.xml annotate

annotate macros.xml @ 1:c589626a4c4b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748

author	iuc
date	Tue, 06 Aug 2024 17:31:11 +0000
parents	d9e56e80a153
children

rev	line source
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1 <macros>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	2 <token name="@TOOL_VERSION@">0.2.4</token>
1 c589626a4c4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	3 <token name="@VERSION_SUFFIX@">4</token>
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	4 <xml name="requirements">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	5 <requirements>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	6 <requirement type="package" version="@TOOL_VERSION@">dimet</requirement>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	7 </requirements>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	8 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	9 <xml name="statistical_test_for_multigroup">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	10 <param name="stat_test" type="select" value="KW" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	11 <option value="KW">Kruskal-Wallis</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	12 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	13 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	14 <xml name="statistical_test_for_bivariate_analysis">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	15 <param name="stat_test" type="select" value="pearson" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	16 <option value="pearson">pearson</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	17 <option value="spearman">spearman</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	18 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	19 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	20 <xml name="statistical_test">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	21 <conditional name="statistics">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	22 <param name="statistical_test_type" type="select" label="Choose which type of statistical test to perform" help="Choose which type of statistical test to perform">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	23 <option value="parametric">parametric</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	24 <option value="non-parametric-rank" selected="true">non-parametric (rank based)</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	25 <option value="non-parametric-distribution">non-parametric (distribution based)</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	26 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	27 <when value="parametric">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	28 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	29 <option value="Tt" selected="true">t-test</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	30 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	31 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	32 <when value="non-parametric-rank">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	33 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	34 <option value="MW">Mann Whitney</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	35 <option value="KW">Kruskal-Wallis</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	36 <option value="ranksum" selected="true">Wilcoxon's rank sum test</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	37 <option value="Wcox">Wilcoxon signed-rank test</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	38 <option value="BrMu">Brunner-Munzel test</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	39 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	40 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	41 <when value="non-parametric-distribution">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	42 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	43 <option value="prm-scipy" selected="true">permutations test</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	44 <option value="disfit">distribution fitting (of the z-score of the ratios), disfit needs several hundreds of metabolites to be trustful.</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	45 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	46 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	47 </conditional>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	48
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	49 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	50 <xml name="citations">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	51 <citations>
1 c589626a4c4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	52 <citation type="doi">10.1093/bioinformatics/btae282</citation>
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	53 <citation type="bibtex">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	54 @software{Galvis_Rodriguez_DIMet,
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	55 author = {Galvis Rodriguez, Johanna and Guyon, Joris and Dartigues, Benjamin and Specque, Florian and Daubon, Thomas and Karkar, Slim and Nikolski, Macha},
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	56 license = {MIT},
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	57 title = {{DIMet}},
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	58 url = {https://github.com/cbib/DIMet}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	59 }
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	60 </citation>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	61 </citations>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	62
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	63 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	64 <xml name="metadata_file_macros">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	65 <param name="metadata_path" type="data" format="tabular" label="metadata file" help="The metadata, a unique file with the description of the samples in your measures' files. This is compulsory, see section Metadata File Information."/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	66 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	67 <xml name="abundance_file_macros">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	68 <param name="abundance_file" type="data" format="tabular" label="Metabolite abundance file" help="The total abundances file must be organized as a matrix: - The first column must contain Metabolite IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples - The rows correspond to the metabolites - The values must be tab separated, with the first row containing the sample/column labels. (see help below for more details)"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	69 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	70 <xml name="enrichment_file_macros">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	71 <param name="me_or_frac_contrib_file" type="data" format="tabular" label="Metabolite enrichment file" help="The mean enrichment file must be organized as a matrix: - The first column must contain Metabolite IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the metabolites. - The values must be tab separated, with the first row containing the sample/column labels. (see help below for more details)"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	72 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	73 <xml name="isotopologue_prop_file_macros">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	74 <param name="isotop_prop_file" type="data" format="tabular" label="Isotopologues proportion abundance file" help=" The isotopologue proportions file must be organized as a matrix: - The first column must contain isotopologues IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the isotopologues. - The values must be tab separated, with the first row containing the sample/column labels (see help below for more details)."/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	75 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	76 <xml name="isotopologue_abs_file_macros">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	77 <param name="isotop_abs_file" type="data" format="tabular" label="Isotopologues absolute abundance file" help="The isotopologue absolute values file must be organized as a matrix: - The first column must contain isotopologues IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the isotopologues. - The values must be tab separated, with the first row containing the sample/column labels (see help below for more details)."/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	78 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	79 <xml name="input_parameters_pca">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	80 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	81 <param name="me_or_frac_contrib_file" type="data" optional="true" format="tabular" label="Mean enrichment or fraction contribution file"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	82 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	83 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	84 <xml name="input_parameters_abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	85 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	86 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	87 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	88 <xml name="input_parameters_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	89 <expand macro="enrichment_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	90 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	91 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	92 <xml name="input_parameters_isotopologue">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	93 <expand macro="isotopologue_prop_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	94 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	95 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	96 <xml name="input_parameters_metabologram">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	97 <conditional name="data_input">
1 c589626a4c4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	98 <param name="data_input_selector" type="select" label="Abundance or Enrichment quantification files" help="Select between metabolite total abundances and mean enrichment files">
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	99 <option value="abundance" selected="True">abundance</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	100 <option value="mean_enrichment">mean_enrichment</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	101 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	102 <when value="abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	103 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	104 <expand macro="statistical_test"/>
1 c589626a4c4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	105
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	106 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	107 <when value="mean_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	108 <expand macro="enrichment_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	109 <expand macro="statistical_test"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	110 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	111 </conditional>
1 c589626a4c4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	112 <expand macro="metadata_file_macros"/>
0 d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	113 <param name="path_kegg_metabolites" type="data" format="tabular" label="Pathways kegg metabolites file" help="A file with the pathways and respective metabolites ID, that must match with those in your metabolomics data. The names of the columns must be the pathways' names, see the minimal data example downloaded from zenodo as explained above. (see help below for more details)"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	114 <param name="path_kegg_transcripts" type="data" format="tabular" label="Pathways kegg transcripts file" help="A file with the pathways and respective gene symbols, which must match with those present in the transcriptomics data. The names of the columns must be the pathways' names, see the minimal data example downloaded from zenodo as explained above. (see help below for more details)"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	115 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	116 <xml name="input_parameters_bivar_analysis">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	117 <conditional name="data_input">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	118 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	119 <option value="abundance" selected="True">abundance</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	120 <option value="mean_enrichment">mean_enrichment</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	121 <option value="isotop_prop">isotop_prop</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	122 <option value="isotop_abs">isotop_abs</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	123 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	124 <when value="abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	125 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	126
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	127 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	128 <when value="mean_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	129 <expand macro="enrichment_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	130 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	131 <when value="isotop_prop">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	132 <expand macro="isotopologue_prop_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	133 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	134 <when value="isotop_abs">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	135 <expand macro="isotopologue_abs_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	136 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	137 </conditional>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	138 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	139 <expand macro="statistical_test_for_bivariate_analysis"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	140 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	141 <xml name="input_parameters_diff_analysis">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	142 <conditional name="data_input">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	143 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	144 <option value="abundance" selected="True">abundance</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	145 <option value="mean_enrichment">mean_enrichment</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	146 <option value="isotop_prop">isotop_prop</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	147 <option value="isotop_abs">isotop_abs</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	148 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	149 <when value="abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	150 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	151 <expand macro="statistical_test"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	152
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	153 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	154 <when value="mean_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	155 <expand macro="enrichment_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	156 <expand macro="statistical_test"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	157 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	158 <when value="isotop_prop">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	159 <expand macro="isotopologue_prop_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	160 <expand macro="statistical_test"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	161 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	162 <when value="isotop_abs">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	163 <expand macro="isotopologue_abs_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	164 <expand macro="statistical_test"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	165 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	166 </conditional>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	167 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	168 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	169 <xml name="input_parameters_multi_diff_analysis">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	170 <conditional name="data_input">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	171 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	172 <option value="abundance" selected="True">abundance</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	173 <option value="mean_enrichment">mean_enrichment</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	174 <option value="isotop_prop">isotop_prop</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	175 <option value="isotop_abs">isotop_abs</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	176 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	177 <when value="abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	178 <expand macro="abundance_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	179 <expand macro="statistical_test_for_multigroup"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	180
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	181 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	182 <when value="mean_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	183 <expand macro="enrichment_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	184 <expand macro="statistical_test_for_multigroup"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	185 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	186 <when value="isotop_prop">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	187 <expand macro="isotopologue_prop_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	188 <expand macro="statistical_test_for_multigroup"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	189 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	190 <when value="isotop_abs">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	191 <expand macro="isotopologue_abs_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	192 <expand macro="statistical_test_for_multigroup"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	193 </when>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	194 </conditional>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	195 <expand macro="metadata_file_macros"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	196 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	197 <xml name="suffix">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	198 <param name="suffix" type="text" optional="false" label="suffix to add to output files" >
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	199 <sanitizer invalid_char="">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	200 <valid initial="string.ascii_letters,string.digits">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	201 <add value="_" />
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	202 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	203 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	204 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	205 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	206 <xml name="conditions">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	207 <param name="conditions" type="select" optional="false" multiple="true" label="Browse conditions from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	208 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	209 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	210 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	211 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	212 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	213 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	214 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	215 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	216 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	217 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	218 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	219 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	220 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	221 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	222 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	223 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	224 <xml name="conditions_multigroup">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	225 <param name="conditions" type="select" optional="false" multiple="true" label="Browse conditions from metadata file. (1 min. only if three timepoints are set). You have to load a metadata file prior to have access to conditions">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	226 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	227 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	228 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	229 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	230 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	231 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	232 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	233 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	234 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	235 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	236 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	237 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	238 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	239 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	240 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	241 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	242 <xml name="timepoint_multigroup">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	243 <param name="timepoint" type="select" optional="true" multiple="true" label="Browse timepoint from metadata file (1 min. only if three conditions are set). You have to load a metadata file prior to have access to conditions">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	244 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	245 <column name="timepoint" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	246 <column name="value" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	247 <filter type="unique_value" name="timepoint" column="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	248 <filter type="remove_value" value="timepoint"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	249 <filter type="sort_by" name="timepoint" column="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	250 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	251 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	252 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	253 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	254 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	255 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	256 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	257 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	258 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	259 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	260 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	261 <xml name="timepoint">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	262 <param name="timepoint" type="select" optional="false" multiple="true" label="Browse timepoint from metadata file (1 min.)">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	263 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	264 <column name="timepoint" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	265 <column name="value" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	266 <filter type="unique_value" name="timepoint" column="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	267 <filter type="remove_value" value="timepoint"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	268 <filter type="sort_by" name="timepoint" column="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	269 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	270 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	271 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	272 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	273 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	274 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	275 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	276 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	277 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	278 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	279 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	280 <xml name="grouping">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	281 <param name="grouping" type="select" optional="false" multiple="true" label="Browse group to compare">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	282 <option value="condition" selected="true">condition</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	283 <option value="timepoint" selected="true">timepoint</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	284 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	285 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	286 <xml name="correction_method">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	287 <param name="correction_method" type="select" value="bonferroni" display="radio" label="Select multiple test correction to apply" help="Please enter at max 1 method">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	288 <option value="bonferroni">bonferroni</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	289 <option value="holm-sidak">holm-sidak</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	290 <option value="holm">holm</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	291 <option value="simes-hochberg">simes-hochberg</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	292 <option value="hommel">hommel</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	293 <option value="fdr_bh">fdr_bh</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	294 <option value="fdr_by">fdr_by</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	295 <option value="fdr_tsbh">fdr_tsbh</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	296 <option value="fdr_tsbky">fdr_tsbky</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	297 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	298 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	299 <xml name="compartments_enrichment">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	300 <param name="compartments" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	301 label="Browse compartments from metadata file (All needed). You have to load a metadata file prior to have access to compartments">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	302 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	303 <column name="compartment" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	304 <column name="value" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	305 <filter type="unique_value" name="compartment" column="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	306 <filter type="remove_value" value="compartment"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	307 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	308 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	309 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	310 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	311 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	312 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	313 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	314 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	315 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	316 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	317 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	318 <xml name="compartments_abundance">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	319 <param name="compartments" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	320 label="Browse compartments from metadata file (All needed). You have to load a metadata file prior to have access to compartments">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	321 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	322 <column name="compartment" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	323 <column name="value" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	324 <filter type="unique_value" name="compartment" column="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	325 <filter type="remove_value" value="compartment"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	326 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	327 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	328 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	329 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	330 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	331 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	332 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	333 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	334 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	335 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	336 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	337 <xml name="compartments_metabologram">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	338 <param name="compartments" type="select" optional="false" multiple="false"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	339 label="Browse compartments from metadata file (1 max.). You have to load a metadata file prior to have access to compartments">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	340 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	341 <column name="compartment" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	342 <column name="value" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	343 <filter type="unique_value" name="compartment" column="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	344 <filter type="remove_value" value="compartment"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	345 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	346 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	347 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	348 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	349 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	350 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	351 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	352 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	353 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	354 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	355 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	356 <xml name="compartments">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	357 <param name="compartments" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	358 label="Browse compartments from metadata file (1 min.). You have to load a metadata file prior to have access to compartments">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	359 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	360 <column name="compartment" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	361 <column name="value" index="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	362 <filter type="unique_value" name="compartment" column="4"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	363 <filter type="remove_value" value="compartment"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	364 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	365 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	366 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	367 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	368 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	369 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	370 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	371 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	372 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	373 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	374 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	375 <xml name="abundance_metabolites_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	376 <param name="metabolites_list" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	377 label="Select Metabolite(s) for condition 1 to plot (1 min). You have to load a abundance file prior to have access to metabolite list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	378 <validator type="length" min="1" message="Please enter at max 2 compartments"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	379 <options from_dataset="abundance_file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	380 <column name="metabolite_or_isotopologue" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	381 <column name="value" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	382 <filter type="unique_value" name="metabolite_or_isotopologue" column="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	383 <filter type="remove_value" value="metabolite_or_isotopologue"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	384 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	385 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	386 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	387 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	388 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	389 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	390 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	391 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	392 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	393 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	394 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	395 <xml name="enrichment_metabolites_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	396 <param name="metabolites_list" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	397 label="Select Metabolite(s) for condition 1 to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	398 <validator type="length" min="1" message="Please enter at min 1 metabolite"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	399 <options from_dataset="me_or_frac_contrib_file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	400 <column name="ID" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	401 <column name="value" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	402 <filter type="unique_value" name="ID" column="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	403 <filter type="remove_value" value="ID"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	404 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	405 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	406 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	407 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	408 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	409 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	410 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	411 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	412 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	413 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	414 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	415 <xml name="isotopologue_metabolites_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	416 <param name="metabolites_list" type="select" optional="false" multiple="true"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	417 label="Select Metabolite(s) to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	418 <validator type="length" min="1" message="Please enter at min 1 metabolite"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	419 <options from_dataset="isotop_prop_file">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	420 <column name="ID" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	421 <column name="value" index="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	422 <filter type="unique_value" name="ID" column="0"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	423 <filter type="remove_value" value="ID"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	424 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	425 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	426 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	427 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	428 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	429 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	430 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	431 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	432 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	433 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	434 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	435 <xml name="deg_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	436 <repeat name="deg_list" title="Deregulated gene set" default="1" min="1">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	437 <param name="input" type="data" format="tabular" label="Deregulated genes set"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	438 <param name="idcol" type="data_column" data_ref="input" label="Column for id" use_header_names="true"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	439 <param name="valuecol" type="data_column" data_ref="input" label="Column for values" use_header_names="true"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	440 <param name="timepoint" type="select" optional="false" multiple="false" label="Browse timepoint from metadata file (1 min.)">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	441 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	442 <column name="timepoint" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	443 <column name="value" index="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	444 <filter type="unique_value" name="timepoint" column="2"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	445 <filter type="remove_value" value="timepoint"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	446 <filter type="sort_by" name="timepoint" column="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	447 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	448 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	449 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	450 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	451 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	452 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	453 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	454 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	455 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	456 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	457 <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	458 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	459 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	460 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	461 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	462 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	463 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	464 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	465 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	466 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	467 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	468 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	469 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	470 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	471 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	472 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	473 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	474 </repeat>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	475
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	476 </repeat>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	477 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	478 <xml name="plot_abundance_factor_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	479 <repeat name="plot_abundance_factor_list" title="Conditions" min="1" help="Specify conditions to compare from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	480 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	481 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	482 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	483 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	484 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	485 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	486 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	487 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	488 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	489 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	490 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	491 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	492 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	493 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	494 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	495 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	496 </repeat>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	497 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	498 <xml name="plot_factor_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	499 <repeat name="plot_factor_list" title="Conditions" min="2" help="Specify conditions to compare from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	500 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	501 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	502 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	503 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	504 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	505 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	506 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	507 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	508 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	509 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	510 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	511 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	512 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	513 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	514 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	515 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	516 </repeat>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	517 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	518 <xml name="factor_list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	519 <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to be taken into account from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	520 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	521 <options from_dataset="metadata_path">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	522 <column name="condition" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	523 <column name="value" index="1"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	524 <filter type="unique_value" name="condition" column="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	525 <filter type="remove_value" value="condition"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	526 </options>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	527 <sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	528 <valid initial="default">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	529 <add preset="string.printable"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	530 <add value="\t"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	531 <remove value="""/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	532 <remove value="'"/>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	533 </valid>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	534 </sanitizer>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	535 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	536 </repeat>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	537 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	538 <xml name="palette">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	539 <param name="palette" type="select" value="pastel" display="radio" label="Select palette colormap to apply to abundance plot." help="For more information see https://seaborn.pydata.org/tutorial/color_palettes.html">
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	540 <option value="pastel" selected="true">pastel</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	541 <option value="deep">deep</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	542 <option value="muted">muted</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	543 <option value="bright">bright</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	544 <option value="dark">dark</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	545 <option value="colorblind">colorblind</option>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	546 </param>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	547 </xml>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	548 <token name="@INIT_PCA@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	549 #import json
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	550 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	551
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	552 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	553
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	554 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	555 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	556 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	557 #if $abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	558 ln -s '$abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	559 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	560 #if $me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	561 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	562 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	563
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	564 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	565 <token name="@INIT_CONFIG@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	566 mkdir -p 'config' &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	567 touch 'config/config.yaml' &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	568 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	569 <token name="@REMOVE_CONFIG@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	570 && rm -r 'config'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	571 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	572 <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	573
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	574 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	575 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	576 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	577 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	578 #if $abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	579 ln -s '$abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	580 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	581 #set $axisx = "condition"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	582 #if str( $output_options.bar_color ) == "condition":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	583 #set $axisx = "timepoint"
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	584 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	585
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	586 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	587 <token name="@INIT_ENRICHMENT_PLOT@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	588
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	589 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	590
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	591 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	592 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	593 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	594 #if $me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	595 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	596 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	597 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	598 <token name="@INIT_ISOTOPOLOGUE_PLOT@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	599
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	600 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	601
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	602 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	603 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	604 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	605 #if $isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	606 ln -s '$isotop_prop_file' data/isotop_prop.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	607 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	608 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	609 <token name="@INIT_BI_ANALYSIS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	610
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	611 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	612
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	613 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	614 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	615 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	616
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	617
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	618 #set conditions_MDV_comparison = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	619 #set timepoints_MDV_comparison = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	620 #set conditions_metabolite_time_profiles = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	621
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	622 #if str( $stat_test ) == "pearson":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	623 #silent $conditions_MDV_comparison['isotopologue_proportions']='pearson'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	624 #silent $timepoints_MDV_comparison['isotopologue_proportions']='pearson'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	625 #silent $conditions_metabolite_time_profiles['abundances']='pearson'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	626 #silent $conditions_metabolite_time_profiles['mean_enrichment']='pearson'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	627 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	628 #silent $conditions_MDV_comparison['isotopologue_proportions']='spearman'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	629 #silent $timepoints_MDV_comparison['isotopologue_proportions']='spearman'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	630 #silent $conditions_metabolite_time_profiles['abundances']='spearman'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	631 #silent $conditions_metabolite_time_profiles['mean_enrichment']='spearman'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	632 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	633 #set $impute_values = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	634 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	635 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	636 ln -s '$data_input.abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	637 #silent $impute_values['abundances']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	638 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	639 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	640 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	641 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	642 #silent $impute_values['mean_enrichment']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	643 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	644 #elif str( $data_input.data_input_selector ) == "isotop_prop":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	645 #if $data_input.isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	646 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	647 #silent $impute_values['isotopologue_proportions']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	648 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	649 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	650 #if $data_input.isotop_abs_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	651 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	652 #silent $impute_values['isotopologues']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	653 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	654 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	655 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	656 <token name="@INIT_DIFF_ANALYSIS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	657
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	658 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	659
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	660 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	661 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	662 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	663
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	664 #set $impute_values = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	665 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	666 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	667 ln -s '$data_input.abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	668 #silent $impute_values['abundances']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	669 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	670 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	671 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	672 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	673 #silent $impute_values['mean_enrichment']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	674 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	675 #elif str( $data_input.data_input_selector ) == "isotop_prop":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	676 #if $data_input.isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	677 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	678 #silent $impute_values['isotopologue_proportions']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	679 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	680 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	681 #if $data_input.isotop_abs_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	682 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	683 #silent $impute_values['isotopologues']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	684 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	685 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	686 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	687 <token name="@INIT_METABOLOGRAM@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	688 #import json
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	689 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	690 #import os
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	691 #import csv
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	692 #import subprocess
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	693
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	694 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	695
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	696 #if $path_kegg_metabolites:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	697 ln -s '$path_kegg_metabolites' data/pathways_kegg_metabolites.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	698 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	699 #if $path_kegg_transcripts:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	700 ln -s '$path_kegg_transcripts' data/pathways_kegg_transcripts.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	701 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	702
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	703 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	704 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	705 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	706
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	707 #set $impute_values = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	708 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	709 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	710 ln -s '$data_input.abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	711 #silent $impute_values['abundances']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	712 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	713 #else:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	714 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	715 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	716 #silent $impute_values['mean_enrichment']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	717 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	718 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	719
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	720 #for $i, $s in enumerate($deg_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	721 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	722 ln -s '${s.input}' data/DEG_comparison'${cpt}'.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	723 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	724
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	725
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	726 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	727 <token name="@INIT_DIFF_MULTIGROUP_ANALYSIS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	728
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	729 mkdir -p data &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	730
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	731 #if $metadata_path:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	732 ln -s '$metadata_path' data/metadata.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	733 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	734
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	735 #set $impute_values = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	736 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	737 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	738 ln -s '$data_input.abundance_file' data/abundance.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	739 #silent $impute_values['abundances']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	740 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	741 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	742 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	743 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	744 #silent $impute_values['mean_enrichment']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	745 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	746 #elif str( $data_input.data_input_selector ) == "isotop_prop":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	747 #if $data_input.isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	748 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	749 #silent $impute_values['isotopologue_proportions']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	750 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	751 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	752 #if $data_input.isotop_abs_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	753 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	754 #silent $impute_values['isotopologues']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	755 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	756 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	757 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	758 <token name="@INIT_IMPUTE_VALUES@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	759 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	760 #set $impute_values = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	761 #if $abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	762 #silent $impute_values['abundances']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	763 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	764 #if $me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	765 #silent $impute_values['mean_enrichment']='min'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	766 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	767 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	768 <token name="@INIT_DATATYPES@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	769 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	770 #set $datatypes_avail = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	771 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	772 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	773 $datatypes_avail.append(re.sub('"', '', "abundances"))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	774 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	775 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	776 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	777 $datatypes_avail.append(re.sub('"', '', "mean_enrichment"))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	778 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	779 #elif str( $data_input.data_input_selector ) == "isotop_prop":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	780 #if $data_input.isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	781 $datatypes_avail.append(re.sub('"', '', "isotopologue_proportions"))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	782 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	783 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	784 #if $data_input.isotop_abs_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	785 $datatypes_avail.append(re.sub('"', '', "isotopologues"))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	786 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	787 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	788 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	789 <token name="@INIT_STAT_TEST@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	790 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	791 #set $statistical_test = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	792 #if str( $data_input.data_input_selector ) == "abundance":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	793 #if $data_input.abundance_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	794 #silent $statistical_test['abundances']=str($data_input.stat_test)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	795 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	796 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	797 #if $data_input.me_or_frac_contrib_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	798 #silent $statistical_test['mean_enrichment']=str($data_input.stat_test)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	799 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	800 #elif str( $data_input.data_input_selector ) == "isotop_prop":
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	801 #if $data_input.isotop_prop_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	802 #silent $statistical_test['isotopologue_proportions']=str($data_input.stat_test)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	803 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	804 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	805 #if $data_input.isotop_abs_file:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	806 #silent $statistical_test['isotopologues']=str($data_input.stat_test)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	807 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	808 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	809 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	810 <token name="@INIT_CONDITIONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	811 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	812 #set $conds = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	813 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	814 $conds.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	815 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	816 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	817 <token name="@INIT_PLOT_CONDITIONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	818 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	819 #for $i, $s in enumerate($plot_factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	820 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	821 $conditions.append(re.sub('"', '', str($s.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	822 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	823 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	824 <token name="@INIT_ABUNDANCE_PLOT_CONDITIONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	825 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	826 #for $i, $s in enumerate($plot_abundance_factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	827 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	828 $conditions.append(re.sub('"', '', str($s.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	829 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	830 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	831 <token name="@INIT_TIMEPOINTS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	832
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	833 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	834 #set $timepoints = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	835 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	836 $timepoints.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	837 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	838 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	839 <token name="@INIT_GROUPS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	840 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	841 #set $groups = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	842 $groups.append(re.sub('"', '', str("condition")))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	843 $groups.append(re.sub('"', '', str("timepoint")))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	844
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	845 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	846 <token name="@INIT_ENRICHMENT_METABOLITES@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	847 #import json
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	848 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	849 #set $metabolites = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	850 #for $cp in $compartments:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	851 #silent $metabolites[re.sub('"', '', str($cp))]=list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	852 #for $met in $metabolites_list:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	853 #set tmp_met=re.sub('\,', '%%',str($met))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	854 #set tmp_met_bis=str(re.split('_m', str($tmp_met))[0])
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	855 #set tmp_met_ter=re.sub('%%', '\,',str($tmp_met_bis))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	856 $metabolites[re.sub('"', '', str($cp))].append(re.sub('"', '\'', str(tmp_met_ter)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	857 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	858 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	859 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	860 <token name="@INIT_ISOTOPOLOGUE_METABOLITES@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	861 #set $metabolites = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	862 #for $cp in $compartments:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	863 #silent $metabolites[re.sub('"', '', str($cp))]=list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	864 #for $met in $metabolites_list:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	865 #set tmp_met=re.sub('\,', '--',str($met))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	866 #set tmp_met_bis=str(re.split('_m', str($tmp_met))[0])
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	867 #set tmp_met_ter=re.sub('--', '\,',str($tmp_met_bis))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	868 $metabolites[re.sub('"', '', str($cp))].append(re.sub('"', '\'', str(tmp_met_ter)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	869 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	870 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	871 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	872 <token name="@INIT_MULTIGROUP_COMPARISONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	873 #set $comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	874 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	875 #set $ctrl_found=False
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	876 #set $ctrl=""
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	877
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	878 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	879 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	880 #if str($co) in ["Control", "control","ctrl"]:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	881 #set $ctrl_found=True
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	882 #set $ctrl=str($co)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	883 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	884 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	885 #else:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	886 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	887 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	888
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	889 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	890 $comparisons.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	891 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	892 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	893 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	894 <token name="@INIT_CONDITIONS_TIMECOURSE@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	895 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	896 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	897 #for $i, $s in enumerate($factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	898 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	899 $conditions.append(re.sub('"', '', str($s.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	900 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	901
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	902 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	903 <token name="@INIT_BIVAR_COMPARISONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	904 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	905 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	906 #for $i, $s in enumerate($plot_factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	907 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	908 $conditions.append(re.sub('"', '', str($s.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	909 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	910 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	911 <token name="@INIT_COMPARISONS_METABOLOGRAM@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	912 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	913 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	914 #set $timepoints = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	915 #set $comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	916 #for $i, $s in enumerate($deg_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	917 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	918 #set $comparisons_bis = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	919 #for $j, $t in enumerate($s.factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	920 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	921 #if str($t.condition) not in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	922 $conditions.append(re.sub('"', '', str($t.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	923 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	924 $sub_comparisons.append(re.sub('"', '', str($t.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	925 $sub_comparisons.append(re.sub('"', '', str($s.timepoint)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	926 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	927 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	928 $timepoints.append(re.sub('"', '', str($s.timepoint)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	929 $comparisons.append($comparisons_bis)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	930 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	931
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	932
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	933
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	934 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	935 <token name="@INIT_COMPARISONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	936 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	937 #set $conds = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	938 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	939 $conds.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	940 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	941 #set $timepoints = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	942 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	943 $timepoints.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	944 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	945
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	946 #set $comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	947 #if len($conds) > 1:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	948 #if len($timepoints) > 0:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	949 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	950 #set $ctrl_found=False
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	951 #set $ctrl=""
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	952 #set $comparisons_bis = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	953 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	954 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	955 #if str($co) in ["'Control'", "'control'", "'ctrl'"]:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	956 #set $ctrl_found=True
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	957 #set $ctrl=str($co)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	958 #else:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	959 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	960 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	961
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	962 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	963 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	964 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	965
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	966 #if $ctrl_found:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	967 $sub_comparisons.append(str($ctrl))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	968 $sub_comparisons.append(str($tp))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	969 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	970 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	971
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	972 $comparisons.append($comparisons_bis)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	973 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	974 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	975 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	976 $comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	977 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	978 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	979
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	980 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	981 #if len($conds) > 0:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	982 #if len($timepoints) > 1:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	983 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	984 #set $comparisons_bis = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	985 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	986 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	987 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	988 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	989 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	990 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	991 $comparisons.append($comparisons_bis)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	992 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	993 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	994 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	995 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	996 $comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	997 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	998 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	999 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1000 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1001 <token name="@INIT_DIFF_ANALYSIS_COMPARISONS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1002 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1003 #set $conditions = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1004 #for $i, $s in enumerate($factor_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1005 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1006 $conditions.append(re.sub('"', '', str($s.condition)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1007 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1008
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1009 #set $timepoints = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1010 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1011 $timepoints.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1012 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1013
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1014 #set $comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1015 #if len($conditions) > 1:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1016 #if len($timepoints) > 0:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1017 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1018 #set $ctrl_found=False
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1019 #set $ctrl=""
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1020 #set $comparisons_bis = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1021
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1022 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1023 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1024 #if str($co) in ["'Control'", "'control'", "'ctrl'"]:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1025 #set $ctrl_found=True
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1026 #set $ctrl=str($co)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1027 #else:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1028 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1029 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1030
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1031 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1032 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1033 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1034
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1035 #if $ctrl_found:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1036 $sub_comparisons.append(str($ctrl))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1037 $sub_comparisons.append(str($tp))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1038 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1039 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1040
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1041 $comparisons.append($comparisons_bis)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1042 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1043 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1044 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1045 $comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1046 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1047 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1048
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1049 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1050 #if len($conditions) > 0:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1051 #if len($timepoints) > 1:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1052 #for $co in $conditions:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1053 #set $comparisons_bis = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1054 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1055 #set $sub_comparisons = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1056 $sub_comparisons.append(re.sub('"', '', str($co)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1057 $sub_comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1058 $comparisons_bis.append($sub_comparisons)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1059 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1060 $comparisons.append($comparisons_bis)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1061 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1062 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1063 #else
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1064 #for $tp in $timepoint:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1065 $comparisons.append(re.sub('"', '', str($tp)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1066 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1067 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1068 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1069 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1070 <token name="@INIT_TRANSCRIPTS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1071 #import re
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1072 #import os
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1073 #import subprocess
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1074 #set $transcripts = list()
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1075
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1076 #for $i, $s in enumerate($deg_list)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1077 #set $cpt = str($i+1)
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1078 $transcripts.append(re.sub('"', '', "DEG_comparison"+str($i+1)))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1079 #set $deg_one_values = os.fsdecode(subprocess.check_output('head -n1 ' + str($s.input) + '\| cut -f' + str($s.valuecol), shell=True))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1080 #set $deg_one_id = os.fsdecode(subprocess.check_output('head -n1 ' + str($s.input) + '\| cut -f' + str($s.idcol), shell=True))
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1081 #end for
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1082 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1083 <token name="@INIT_PATHWAYS@"><![CDATA[
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1084 #set $pathways = {}
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1085 #if $path_kegg_metabolites:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1086 #silent $pathways['metabolites']='pathways_kegg_metabolites'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1087 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1088 #if $path_kegg_transcripts:
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1089 #silent $pathways['transcripts']='pathways_kegg_transcripts'
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1090 #end if
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1091 ]]></token>
d9e56e80a153 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1092 </macros>

Mercurial > repos > iuc > dimet_timecourse_analysis

annotate macros.xml @ 1:c589626a4c4b draft default tip