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comparison dimet_differential_analysis.xml @ 1:c756cf333cd7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748
author iuc
date Tue, 06 Aug 2024 17:34:47 +0000
parents 1ccbaa9510dc
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0:1ccbaa9510dc 1:c756cf333cd7
264 264
265 **Running the analysis** 265 **Running the analysis**
266 266
267 You can precise how you want your analysis to be executed, with the parameters: 267 You can precise how you want your analysis to be executed, with the parameters:
268 268
269 - **conditions**: the conditions present in your data, to perform the pairwise comparison.
270
271 - **comparisons** : the pairs of [condition, timepoint] groups to compare
272
273 - **datatypes** : the measures type(s) that you want to run (see above in Input data files section) 269 - **datatypes** : the measures type(s) that you want to run (see above in Input data files section)
270
271 - **conditions**: the two 'Conditions' boxes must be filled in a coherent order, keeping in mind that the last specified condition is the reference or control.
272
273 - **timepoint** : the time point at which the two conditions will be compared.
274 274
275 - **statistical_test** : choose, by type of measure, the specific statistical test to be applied. 275 - **statistical_test** : choose, by type of measure, the specific statistical test to be applied.
276 276
277 Kruskal-Wallis, Mann-Whitney, Wilcoxon’s signed rank test, Wilcoxon’s rank sum test 277 Kruskal-Wallis, Mann-Whitney, Wilcoxon’s signed rank test, Wilcoxon’s rank sum test
278 t-test, and permutation test are currently offered (we use the trusted functions from scipy library https://docs.scipy.org/doc/scipy/reference/stats.html). 278 t-test, and permutation test are currently offered (we use the trusted functions from scipy library https://docs.scipy.org/doc/scipy/reference/stats.html).