dimet_differential_analysis: macros.xml annotate

annotate macros.xml @ 1:c756cf333cd7 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748

author	iuc
date	Tue, 06 Aug 2024 17:34:47 +0000
parents	1ccbaa9510dc
children

rev	line source
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1 <macros>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	2 <token name="@TOOL_VERSION@">0.2.4</token>
1 c756cf333cd7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	3 <token name="@VERSION_SUFFIX@">4</token>
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	4 <xml name="requirements">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	5 <requirements>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	6 <requirement type="package" version="@TOOL_VERSION@">dimet</requirement>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	7 </requirements>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	8 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	9 <xml name="statistical_test_for_multigroup">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	10 <param name="stat_test" type="select" value="KW" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	11 <option value="KW">Kruskal-Wallis</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	12 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	13 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	14 <xml name="statistical_test_for_bivariate_analysis">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	15 <param name="stat_test" type="select" value="pearson" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	16 <option value="pearson">pearson</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	17 <option value="spearman">spearman</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	18 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	19 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	20 <xml name="statistical_test">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	21 <conditional name="statistics">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	22 <param name="statistical_test_type" type="select" label="Choose which type of statistical test to perform" help="Choose which type of statistical test to perform">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	23 <option value="parametric">parametric</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	24 <option value="non-parametric-rank" selected="true">non-parametric (rank based)</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	25 <option value="non-parametric-distribution">non-parametric (distribution based)</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	26 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	27 <when value="parametric">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	28 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	29 <option value="Tt" selected="true">t-test</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	30 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	31 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	32 <when value="non-parametric-rank">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	33 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	34 <option value="MW">Mann Whitney</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	35 <option value="KW">Kruskal-Wallis</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	36 <option value="ranksum" selected="true">Wilcoxon's rank sum test</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	37 <option value="Wcox">Wilcoxon signed-rank test</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	38 <option value="BrMu">Brunner-Munzel test</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	39 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	40 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	41 <when value="non-parametric-distribution">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	42 <param name="stat_test" type="select" display="radio" label="Select statistical to apply" help="Please enter at max 1 statistical test by file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	43 <option value="prm-scipy" selected="true">permutations test</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	44 <option value="disfit">distribution fitting (of the z-score of the ratios), disfit needs several hundreds of metabolites to be trustful.</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	45 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	46 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	47 </conditional>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	48
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	49 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	50 <xml name="citations">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	51 <citations>
1 c756cf333cd7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	52 <citation type="doi">10.1093/bioinformatics/btae282</citation>
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	53 <citation type="bibtex">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	54 @software{Galvis_Rodriguez_DIMet,
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	55 author = {Galvis Rodriguez, Johanna and Guyon, Joris and Dartigues, Benjamin and Specque, Florian and Daubon, Thomas and Karkar, Slim and Nikolski, Macha},
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	56 license = {MIT},
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	57 title = {{DIMet}},
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	58 url = {https://github.com/cbib/DIMet}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	59 }
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	60 </citation>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	61 </citations>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	62
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	63 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	64 <xml name="metadata_file_macros">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	65 <param name="metadata_path" type="data" format="tabular" label="metadata file" help="The metadata, a unique file with the description of the samples in your measures' files. This is compulsory, see section Metadata File Information."/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	66 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	67 <xml name="abundance_file_macros">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	68 <param name="abundance_file" type="data" format="tabular" label="Metabolite abundance file" help="The total abundances file must be organized as a matrix: - The first column must contain Metabolite IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples - The rows correspond to the metabolites - The values must be tab separated, with the first row containing the sample/column labels. (see help below for more details)"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	69 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	70 <xml name="enrichment_file_macros">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	71 <param name="me_or_frac_contrib_file" type="data" format="tabular" label="Metabolite enrichment file" help="The mean enrichment file must be organized as a matrix: - The first column must contain Metabolite IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the metabolites. - The values must be tab separated, with the first row containing the sample/column labels. (see help below for more details)"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	72 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	73 <xml name="isotopologue_prop_file_macros">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	74 <param name="isotop_prop_file" type="data" format="tabular" label="Isotopologues proportion abundance file" help=" The isotopologue proportions file must be organized as a matrix: - The first column must contain isotopologues IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the isotopologues. - The values must be tab separated, with the first row containing the sample/column labels (see help below for more details)."/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	75 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	76 <xml name="isotopologue_abs_file_macros">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	77 <param name="isotop_abs_file" type="data" format="tabular" label="Isotopologues absolute abundance file" help="The isotopologue absolute values file must be organized as a matrix: - The first column must contain isotopologues IDs that are unique (not repeated) within the file. - The rest of the columns correspond to the samples. - The rows correspond to the isotopologues. - The values must be tab separated, with the first row containing the sample/column labels (see help below for more details)."/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	78 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	79 <xml name="input_parameters_pca">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	80 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	81 <param name="me_or_frac_contrib_file" type="data" optional="true" format="tabular" label="Mean enrichment or fraction contribution file"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	82 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	83 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	84 <xml name="input_parameters_abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	85 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	86 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	87 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	88 <xml name="input_parameters_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	89 <expand macro="enrichment_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	90 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	91 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	92 <xml name="input_parameters_isotopologue">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	93 <expand macro="isotopologue_prop_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	94 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	95 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	96 <xml name="input_parameters_metabologram">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	97 <conditional name="data_input">
1 c756cf333cd7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	98 <param name="data_input_selector" type="select" label="Abundance or Enrichment quantification files" help="Select between metabolite total abundances and mean enrichment files">
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	99 <option value="abundance" selected="True">abundance</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	100 <option value="mean_enrichment">mean_enrichment</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	101 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	102 <when value="abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	103 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	104 <expand macro="statistical_test"/>
1 c756cf333cd7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	105
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	106 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	107 <when value="mean_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	108 <expand macro="enrichment_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	109 <expand macro="statistical_test"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	110 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	111 </conditional>
1 c756cf333cd7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 6da96d865a3a557cfa3ad09e1cfa830519e73748 iuc parents: 0 diff changeset	112 <expand macro="metadata_file_macros"/>
0 1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	113 <param name="path_kegg_metabolites" type="data" format="tabular" label="Pathways kegg metabolites file" help="A file with the pathways and respective metabolites ID, that must match with those in your metabolomics data. The names of the columns must be the pathways' names, see the minimal data example downloaded from zenodo as explained above. (see help below for more details)"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	114 <param name="path_kegg_transcripts" type="data" format="tabular" label="Pathways kegg transcripts file" help="A file with the pathways and respective gene symbols, which must match with those present in the transcriptomics data. The names of the columns must be the pathways' names, see the minimal data example downloaded from zenodo as explained above. (see help below for more details)"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	115 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	116 <xml name="input_parameters_bivar_analysis">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	117 <conditional name="data_input">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	118 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	119 <option value="abundance" selected="True">abundance</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	120 <option value="mean_enrichment">mean_enrichment</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	121 <option value="isotop_prop">isotop_prop</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	122 <option value="isotop_abs">isotop_abs</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	123 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	124 <when value="abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	125 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	126
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	127 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	128 <when value="mean_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	129 <expand macro="enrichment_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	130 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	131 <when value="isotop_prop">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	132 <expand macro="isotopologue_prop_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	133 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	134 <when value="isotop_abs">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	135 <expand macro="isotopologue_abs_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	136 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	137 </conditional>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	138 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	139 <expand macro="statistical_test_for_bivariate_analysis"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	140 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	141 <xml name="input_parameters_diff_analysis">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	142 <conditional name="data_input">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	143 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	144 <option value="abundance" selected="True">abundance</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	145 <option value="mean_enrichment">mean_enrichment</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	146 <option value="isotop_prop">isotop_prop</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	147 <option value="isotop_abs">isotop_abs</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	148 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	149 <when value="abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	150 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	151 <expand macro="statistical_test"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	152
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	153 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	154 <when value="mean_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	155 <expand macro="enrichment_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	156 <expand macro="statistical_test"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	157 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	158 <when value="isotop_prop">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	159 <expand macro="isotopologue_prop_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	160 <expand macro="statistical_test"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	161 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	162 <when value="isotop_abs">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	163 <expand macro="isotopologue_abs_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	164 <expand macro="statistical_test"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	165 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	166 </conditional>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	167 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	168 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	169 <xml name="input_parameters_multi_diff_analysis">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	170 <conditional name="data_input">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	171 <param name="data_input_selector" type="select" label="Abundance, Enrichment or Isotopologues quantification files" help="Select between raw abundance, mean enrichment or isotopologue files">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	172 <option value="abundance" selected="True">abundance</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	173 <option value="mean_enrichment">mean_enrichment</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	174 <option value="isotop_prop">isotop_prop</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	175 <option value="isotop_abs">isotop_abs</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	176 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	177 <when value="abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	178 <expand macro="abundance_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	179 <expand macro="statistical_test_for_multigroup"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	180
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	181 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	182 <when value="mean_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	183 <expand macro="enrichment_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	184 <expand macro="statistical_test_for_multigroup"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	185 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	186 <when value="isotop_prop">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	187 <expand macro="isotopologue_prop_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	188 <expand macro="statistical_test_for_multigroup"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	189 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	190 <when value="isotop_abs">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	191 <expand macro="isotopologue_abs_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	192 <expand macro="statistical_test_for_multigroup"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	193 </when>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	194 </conditional>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	195 <expand macro="metadata_file_macros"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	196 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	197 <xml name="suffix">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	198 <param name="suffix" type="text" optional="false" label="suffix to add to output files" >
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	199 <sanitizer invalid_char="">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	200 <valid initial="string.ascii_letters,string.digits">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	201 <add value="_" />
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	202 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	203 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	204 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	205 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	206 <xml name="conditions">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	207 <param name="conditions" type="select" optional="false" multiple="true" label="Browse conditions from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	208 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	209 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	210 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	211 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	212 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	213 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	214 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	215 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	216 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	217 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	218 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	219 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	220 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	221 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	222 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	223 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	224 <xml name="conditions_multigroup">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	225 <param name="conditions" type="select" optional="false" multiple="true" label="Browse conditions from metadata file. (1 min. only if three timepoints are set). You have to load a metadata file prior to have access to conditions">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	226 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	227 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	228 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	229 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	230 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	231 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	232 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	233 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	234 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	235 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	236 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	237 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	238 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	239 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	240 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	241 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	242 <xml name="timepoint_multigroup">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	243 <param name="timepoint" type="select" optional="true" multiple="true" label="Browse timepoint from metadata file (1 min. only if three conditions are set). You have to load a metadata file prior to have access to conditions">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	244 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	245 <column name="timepoint" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	246 <column name="value" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	247 <filter type="unique_value" name="timepoint" column="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	248 <filter type="remove_value" value="timepoint"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	249 <filter type="sort_by" name="timepoint" column="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	250 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	251 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	252 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	253 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	254 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	255 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	256 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	257 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	258 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	259 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	260 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	261 <xml name="timepoint">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	262 <param name="timepoint" type="select" optional="false" multiple="true" label="Browse timepoint from metadata file (1 min.)">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	263 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	264 <column name="timepoint" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	265 <column name="value" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	266 <filter type="unique_value" name="timepoint" column="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	267 <filter type="remove_value" value="timepoint"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	268 <filter type="sort_by" name="timepoint" column="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	269 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	270 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	271 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	272 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	273 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	274 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	275 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	276 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	277 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	278 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	279 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	280 <xml name="grouping">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	281 <param name="grouping" type="select" optional="false" multiple="true" label="Browse group to compare">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	282 <option value="condition" selected="true">condition</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	283 <option value="timepoint" selected="true">timepoint</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	284 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	285 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	286 <xml name="correction_method">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	287 <param name="correction_method" type="select" value="bonferroni" display="radio" label="Select multiple test correction to apply" help="Please enter at max 1 method">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	288 <option value="bonferroni">bonferroni</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	289 <option value="holm-sidak">holm-sidak</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	290 <option value="holm">holm</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	291 <option value="simes-hochberg">simes-hochberg</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	292 <option value="hommel">hommel</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	293 <option value="fdr_bh">fdr_bh</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	294 <option value="fdr_by">fdr_by</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	295 <option value="fdr_tsbh">fdr_tsbh</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	296 <option value="fdr_tsbky">fdr_tsbky</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	297 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	298 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	299 <xml name="compartments_enrichment">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	300 <param name="compartments" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	301 label="Browse compartments from metadata file (All needed). You have to load a metadata file prior to have access to compartments">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	302 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	303 <column name="compartment" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	304 <column name="value" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	305 <filter type="unique_value" name="compartment" column="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	306 <filter type="remove_value" value="compartment"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	307 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	308 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	309 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	310 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	311 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	312 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	313 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	314 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	315 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	316 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	317 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	318 <xml name="compartments_abundance">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	319 <param name="compartments" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	320 label="Browse compartments from metadata file (All needed). You have to load a metadata file prior to have access to compartments">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	321 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	322 <column name="compartment" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	323 <column name="value" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	324 <filter type="unique_value" name="compartment" column="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	325 <filter type="remove_value" value="compartment"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	326 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	327 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	328 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	329 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	330 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	331 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	332 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	333 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	334 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	335 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	336 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	337 <xml name="compartments_metabologram">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	338 <param name="compartments" type="select" optional="false" multiple="false"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	339 label="Browse compartments from metadata file (1 max.). You have to load a metadata file prior to have access to compartments">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	340 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	341 <column name="compartment" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	342 <column name="value" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	343 <filter type="unique_value" name="compartment" column="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	344 <filter type="remove_value" value="compartment"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	345 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	346 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	347 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	348 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	349 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	350 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	351 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	352 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	353 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	354 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	355 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	356 <xml name="compartments">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	357 <param name="compartments" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	358 label="Browse compartments from metadata file (1 min.). You have to load a metadata file prior to have access to compartments">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	359 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	360 <column name="compartment" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	361 <column name="value" index="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	362 <filter type="unique_value" name="compartment" column="4"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	363 <filter type="remove_value" value="compartment"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	364 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	365 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	366 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	367 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	368 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	369 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	370 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	371 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	372 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	373 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	374 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	375 <xml name="abundance_metabolites_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	376 <param name="metabolites_list" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	377 label="Select Metabolite(s) for condition 1 to plot (1 min). You have to load a abundance file prior to have access to metabolite list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	378 <validator type="length" min="1" message="Please enter at max 2 compartments"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	379 <options from_dataset="abundance_file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	380 <column name="metabolite_or_isotopologue" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	381 <column name="value" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	382 <filter type="unique_value" name="metabolite_or_isotopologue" column="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	383 <filter type="remove_value" value="metabolite_or_isotopologue"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	384 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	385 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	386 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	387 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	388 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	389 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	390 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	391 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	392 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	393 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	394 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	395 <xml name="enrichment_metabolites_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	396 <param name="metabolites_list" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	397 label="Select Metabolite(s) for condition 1 to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	398 <validator type="length" min="1" message="Please enter at min 1 metabolite"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	399 <options from_dataset="me_or_frac_contrib_file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	400 <column name="ID" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	401 <column name="value" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	402 <filter type="unique_value" name="ID" column="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	403 <filter type="remove_value" value="ID"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	404 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	405 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	406 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	407 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	408 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	409 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	410 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	411 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	412 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	413 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	414 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	415 <xml name="isotopologue_metabolites_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	416 <param name="metabolites_list" type="select" optional="false" multiple="true"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	417 label="Select Metabolite(s) to plot (1 Min.). You have to load a abundance file prior to have access to metabolite list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	418 <validator type="length" min="1" message="Please enter at min 1 metabolite"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	419 <options from_dataset="isotop_prop_file">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	420 <column name="ID" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	421 <column name="value" index="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	422 <filter type="unique_value" name="ID" column="0"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	423 <filter type="remove_value" value="ID"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	424 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	425 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	426 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	427 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	428 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	429 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	430 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	431 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	432 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	433 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	434 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	435 <xml name="deg_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	436 <repeat name="deg_list" title="Deregulated gene set" default="1" min="1">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	437 <param name="input" type="data" format="tabular" label="Deregulated genes set"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	438 <param name="idcol" type="data_column" data_ref="input" label="Column for id" use_header_names="true"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	439 <param name="valuecol" type="data_column" data_ref="input" label="Column for values" use_header_names="true"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	440 <param name="timepoint" type="select" optional="false" multiple="false" label="Browse timepoint from metadata file (1 min.)">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	441 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	442 <column name="timepoint" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	443 <column name="value" index="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	444 <filter type="unique_value" name="timepoint" column="2"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	445 <filter type="remove_value" value="timepoint"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	446 <filter type="sort_by" name="timepoint" column="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	447 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	448 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	449 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	450 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	451 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	452 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	453 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	454 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	455 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	456 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	457 <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	458 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	459 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	460 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	461 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	462 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	463 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	464 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	465 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	466 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	467 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	468 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	469 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	470 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	471 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	472 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	473 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	474 </repeat>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	475
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	476 </repeat>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	477 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	478 <xml name="plot_abundance_factor_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	479 <repeat name="plot_abundance_factor_list" title="Conditions" min="1" help="Specify conditions to compare from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	480 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	481 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	482 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	483 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	484 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	485 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	486 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	487 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	488 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	489 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	490 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	491 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	492 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	493 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	494 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	495 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	496 </repeat>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	497 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	498 <xml name="plot_factor_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	499 <repeat name="plot_factor_list" title="Conditions" min="2" help="Specify conditions to compare from metadata file (1 min. only if two timepoints are set. 2 max.). You have to load a metadata file prior to have access to condition list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	500 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	501 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	502 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	503 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	504 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	505 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	506 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	507 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	508 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	509 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	510 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	511 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	512 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	513 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	514 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	515 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	516 </repeat>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	517 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	518 <xml name="factor_list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	519 <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to be taken into account from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	520 <param name="condition" label="Condition" type="select" optional="false" multiple="false">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	521 <options from_dataset="metadata_path">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	522 <column name="condition" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	523 <column name="value" index="1"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	524 <filter type="unique_value" name="condition" column="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	525 <filter type="remove_value" value="condition"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	526 </options>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	527 <sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	528 <valid initial="default">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	529 <add preset="string.printable"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	530 <add value="\t"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	531 <remove value="""/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	532 <remove value="'"/>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	533 </valid>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	534 </sanitizer>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	535 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	536 </repeat>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	537 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	538 <xml name="palette">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	539 <param name="palette" type="select" value="pastel" display="radio" label="Select palette colormap to apply to abundance plot." help="For more information see https://seaborn.pydata.org/tutorial/color_palettes.html">
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	540 <option value="pastel" selected="true">pastel</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	541 <option value="deep">deep</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	542 <option value="muted">muted</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	543 <option value="bright">bright</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	544 <option value="dark">dark</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	545 <option value="colorblind">colorblind</option>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	546 </param>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	547 </xml>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	548 <token name="@INIT_PCA@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	549 #import json
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	550 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	551
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	552 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	553
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	554 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	555 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	556 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	557 #if $abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	558 ln -s '$abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	559 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	560 #if $me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	561 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	562 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	563
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	564 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	565 <token name="@INIT_CONFIG@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	566 mkdir -p 'config' &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	567 touch 'config/config.yaml' &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	568 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	569 <token name="@REMOVE_CONFIG@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	570 && rm -r 'config'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	571 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	572 <token name="@INIT_ABUNDANCE_PLOT@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	573
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	574 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	575 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	576 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	577 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	578 #if $abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	579 ln -s '$abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	580 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	581 #set $axisx = "condition"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	582 #if str( $output_options.bar_color ) == "condition":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	583 #set $axisx = "timepoint"
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	584 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	585
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	586 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	587 <token name="@INIT_ENRICHMENT_PLOT@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	588
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	589 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	590
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	591 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	592 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	593 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	594 #if $me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	595 ln -s '$me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	596 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	597 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	598 <token name="@INIT_ISOTOPOLOGUE_PLOT@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	599
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	600 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	601
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	602 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	603 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	604 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	605 #if $isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	606 ln -s '$isotop_prop_file' data/isotop_prop.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	607 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	608 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	609 <token name="@INIT_BI_ANALYSIS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	610
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	611 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	612
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	613 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	614 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	615 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	616
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	617
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	618 #set conditions_MDV_comparison = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	619 #set timepoints_MDV_comparison = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	620 #set conditions_metabolite_time_profiles = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	621
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	622 #if str( $stat_test ) == "pearson":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	623 #silent $conditions_MDV_comparison['isotopologue_proportions']='pearson'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	624 #silent $timepoints_MDV_comparison['isotopologue_proportions']='pearson'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	625 #silent $conditions_metabolite_time_profiles['abundances']='pearson'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	626 #silent $conditions_metabolite_time_profiles['mean_enrichment']='pearson'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	627 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	628 #silent $conditions_MDV_comparison['isotopologue_proportions']='spearman'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	629 #silent $timepoints_MDV_comparison['isotopologue_proportions']='spearman'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	630 #silent $conditions_metabolite_time_profiles['abundances']='spearman'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	631 #silent $conditions_metabolite_time_profiles['mean_enrichment']='spearman'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	632 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	633 #set $impute_values = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	634 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	635 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	636 ln -s '$data_input.abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	637 #silent $impute_values['abundances']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	638 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	639 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	640 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	641 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	642 #silent $impute_values['mean_enrichment']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	643 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	644 #elif str( $data_input.data_input_selector ) == "isotop_prop":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	645 #if $data_input.isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	646 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	647 #silent $impute_values['isotopologue_proportions']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	648 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	649 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	650 #if $data_input.isotop_abs_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	651 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	652 #silent $impute_values['isotopologues']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	653 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	654 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	655 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	656 <token name="@INIT_DIFF_ANALYSIS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	657
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	658 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	659
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	660 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	661 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	662 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	663
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	664 #set $impute_values = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	665 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	666 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	667 ln -s '$data_input.abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	668 #silent $impute_values['abundances']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	669 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	670 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	671 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	672 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	673 #silent $impute_values['mean_enrichment']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	674 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	675 #elif str( $data_input.data_input_selector ) == "isotop_prop":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	676 #if $data_input.isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	677 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	678 #silent $impute_values['isotopologue_proportions']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	679 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	680 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	681 #if $data_input.isotop_abs_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	682 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	683 #silent $impute_values['isotopologues']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	684 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	685 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	686 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	687 <token name="@INIT_METABOLOGRAM@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	688 #import json
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	689 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	690 #import os
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	691 #import csv
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	692 #import subprocess
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	693
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	694 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	695
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	696 #if $path_kegg_metabolites:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	697 ln -s '$path_kegg_metabolites' data/pathways_kegg_metabolites.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	698 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	699 #if $path_kegg_transcripts:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	700 ln -s '$path_kegg_transcripts' data/pathways_kegg_transcripts.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	701 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	702
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	703 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	704 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	705 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	706
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	707 #set $impute_values = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	708 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	709 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	710 ln -s '$data_input.abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	711 #silent $impute_values['abundances']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	712 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	713 #else:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	714 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	715 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	716 #silent $impute_values['mean_enrichment']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	717 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	718 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	719
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	720 #for $i, $s in enumerate($deg_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	721 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	722 ln -s '${s.input}' data/DEG_comparison'${cpt}'.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	723 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	724
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	725
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	726 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	727 <token name="@INIT_DIFF_MULTIGROUP_ANALYSIS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	728
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	729 mkdir -p data &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	730
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	731 #if $metadata_path:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	732 ln -s '$metadata_path' data/metadata.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	733 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	734
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	735 #set $impute_values = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	736 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	737 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	738 ln -s '$data_input.abundance_file' data/abundance.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	739 #silent $impute_values['abundances']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	740 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	741 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	742 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	743 ln -s '$data_input.me_or_frac_contrib_file' data/me_or_frac_contrib.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	744 #silent $impute_values['mean_enrichment']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	745 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	746 #elif str( $data_input.data_input_selector ) == "isotop_prop":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	747 #if $data_input.isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	748 ln -s '$data_input.isotop_prop_file' data/isotop_prop.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	749 #silent $impute_values['isotopologue_proportions']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	750 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	751 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	752 #if $data_input.isotop_abs_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	753 ln -s '$data_input.isotop_abs_file' data/isotop_abs.csv &&
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	754 #silent $impute_values['isotopologues']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	755 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	756 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	757 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	758 <token name="@INIT_IMPUTE_VALUES@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	759 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	760 #set $impute_values = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	761 #if $abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	762 #silent $impute_values['abundances']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	763 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	764 #if $me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	765 #silent $impute_values['mean_enrichment']='min'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	766 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	767 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	768 <token name="@INIT_DATATYPES@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	769 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	770 #set $datatypes_avail = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	771 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	772 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	773 $datatypes_avail.append(re.sub('"', '', "abundances"))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	774 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	775 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	776 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	777 $datatypes_avail.append(re.sub('"', '', "mean_enrichment"))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	778 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	779 #elif str( $data_input.data_input_selector ) == "isotop_prop":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	780 #if $data_input.isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	781 $datatypes_avail.append(re.sub('"', '', "isotopologue_proportions"))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	782 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	783 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	784 #if $data_input.isotop_abs_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	785 $datatypes_avail.append(re.sub('"', '', "isotopologues"))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	786 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	787 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	788 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	789 <token name="@INIT_STAT_TEST@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	790 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	791 #set $statistical_test = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	792 #if str( $data_input.data_input_selector ) == "abundance":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	793 #if $data_input.abundance_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	794 #silent $statistical_test['abundances']=str($data_input.stat_test)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	795 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	796 #elif str( $data_input.data_input_selector ) == "mean_enrichment":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	797 #if $data_input.me_or_frac_contrib_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	798 #silent $statistical_test['mean_enrichment']=str($data_input.stat_test)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	799 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	800 #elif str( $data_input.data_input_selector ) == "isotop_prop":
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	801 #if $data_input.isotop_prop_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	802 #silent $statistical_test['isotopologue_proportions']=str($data_input.stat_test)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	803 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	804 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	805 #if $data_input.isotop_abs_file:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	806 #silent $statistical_test['isotopologues']=str($data_input.stat_test)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	807 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	808 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	809 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	810 <token name="@INIT_CONDITIONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	811 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	812 #set $conds = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	813 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	814 $conds.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	815 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	816 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	817 <token name="@INIT_PLOT_CONDITIONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	818 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	819 #for $i, $s in enumerate($plot_factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	820 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	821 $conditions.append(re.sub('"', '', str($s.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	822 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	823 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	824 <token name="@INIT_ABUNDANCE_PLOT_CONDITIONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	825 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	826 #for $i, $s in enumerate($plot_abundance_factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	827 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	828 $conditions.append(re.sub('"', '', str($s.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	829 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	830 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	831 <token name="@INIT_TIMEPOINTS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	832
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	833 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	834 #set $timepoints = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	835 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	836 $timepoints.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	837 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	838 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	839 <token name="@INIT_GROUPS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	840 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	841 #set $groups = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	842 $groups.append(re.sub('"', '', str("condition")))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	843 $groups.append(re.sub('"', '', str("timepoint")))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	844
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	845 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	846 <token name="@INIT_ENRICHMENT_METABOLITES@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	847 #import json
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	848 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	849 #set $metabolites = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	850 #for $cp in $compartments:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	851 #silent $metabolites[re.sub('"', '', str($cp))]=list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	852 #for $met in $metabolites_list:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	853 #set tmp_met=re.sub('\,', '%%',str($met))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	854 #set tmp_met_bis=str(re.split('_m', str($tmp_met))[0])
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	855 #set tmp_met_ter=re.sub('%%', '\,',str($tmp_met_bis))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	856 $metabolites[re.sub('"', '', str($cp))].append(re.sub('"', '\'', str(tmp_met_ter)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	857 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	858 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	859 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	860 <token name="@INIT_ISOTOPOLOGUE_METABOLITES@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	861 #set $metabolites = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	862 #for $cp in $compartments:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	863 #silent $metabolites[re.sub('"', '', str($cp))]=list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	864 #for $met in $metabolites_list:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	865 #set tmp_met=re.sub('\,', '--',str($met))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	866 #set tmp_met_bis=str(re.split('_m', str($tmp_met))[0])
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	867 #set tmp_met_ter=re.sub('--', '\,',str($tmp_met_bis))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	868 $metabolites[re.sub('"', '', str($cp))].append(re.sub('"', '\'', str(tmp_met_ter)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	869 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	870 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	871 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	872 <token name="@INIT_MULTIGROUP_COMPARISONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	873 #set $comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	874 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	875 #set $ctrl_found=False
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	876 #set $ctrl=""
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	877
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	878 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	879 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	880 #if str($co) in ["Control", "control","ctrl"]:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	881 #set $ctrl_found=True
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	882 #set $ctrl=str($co)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	883 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	884 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	885 #else:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	886 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	887 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	888
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	889 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	890 $comparisons.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	891 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	892 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	893 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	894 <token name="@INIT_CONDITIONS_TIMECOURSE@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	895 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	896 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	897 #for $i, $s in enumerate($factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	898 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	899 $conditions.append(re.sub('"', '', str($s.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	900 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	901
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	902 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	903 <token name="@INIT_BIVAR_COMPARISONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	904 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	905 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	906 #for $i, $s in enumerate($plot_factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	907 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	908 $conditions.append(re.sub('"', '', str($s.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	909 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	910 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	911 <token name="@INIT_COMPARISONS_METABOLOGRAM@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	912 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	913 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	914 #set $timepoints = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	915 #set $comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	916 #for $i, $s in enumerate($deg_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	917 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	918 #set $comparisons_bis = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	919 #for $j, $t in enumerate($s.factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	920 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	921 #if str($t.condition) not in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	922 $conditions.append(re.sub('"', '', str($t.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	923 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	924 $sub_comparisons.append(re.sub('"', '', str($t.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	925 $sub_comparisons.append(re.sub('"', '', str($s.timepoint)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	926 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	927 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	928 $timepoints.append(re.sub('"', '', str($s.timepoint)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	929 $comparisons.append($comparisons_bis)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	930 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	931
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	932
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	933
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	934 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	935 <token name="@INIT_COMPARISONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	936 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	937 #set $conds = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	938 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	939 $conds.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	940 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	941 #set $timepoints = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	942 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	943 $timepoints.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	944 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	945
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	946 #set $comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	947 #if len($conds) > 1:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	948 #if len($timepoints) > 0:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	949 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	950 #set $ctrl_found=False
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	951 #set $ctrl=""
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	952 #set $comparisons_bis = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	953 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	954 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	955 #if str($co) in ["'Control'", "'control'", "'ctrl'"]:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	956 #set $ctrl_found=True
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	957 #set $ctrl=str($co)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	958 #else:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	959 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	960 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	961
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	962 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	963 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	964 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	965
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	966 #if $ctrl_found:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	967 $sub_comparisons.append(str($ctrl))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	968 $sub_comparisons.append(str($tp))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	969 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	970 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	971
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	972 $comparisons.append($comparisons_bis)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	973 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	974 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	975 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	976 $comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	977 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	978 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	979
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	980 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	981 #if len($conds) > 0:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	982 #if len($timepoints) > 1:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	983 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	984 #set $comparisons_bis = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	985 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	986 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	987 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	988 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	989 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	990 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	991 $comparisons.append($comparisons_bis)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	992 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	993 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	994 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	995 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	996 $comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	997 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	998 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	999 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1000 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1001 <token name="@INIT_DIFF_ANALYSIS_COMPARISONS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1002 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1003 #set $conditions = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1004 #for $i, $s in enumerate($factor_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1005 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1006 $conditions.append(re.sub('"', '', str($s.condition)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1007 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1008
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1009 #set $timepoints = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1010 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1011 $timepoints.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1012 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1013
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1014 #set $comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1015 #if len($conditions) > 1:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1016 #if len($timepoints) > 0:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1017 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1018 #set $ctrl_found=False
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1019 #set $ctrl=""
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1020 #set $comparisons_bis = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1021
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1022 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1023 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1024 #if str($co) in ["'Control'", "'control'", "'ctrl'"]:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1025 #set $ctrl_found=True
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1026 #set $ctrl=str($co)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1027 #else:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1028 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1029 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1030
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1031 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1032 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1033 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1034
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1035 #if $ctrl_found:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1036 $sub_comparisons.append(str($ctrl))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1037 $sub_comparisons.append(str($tp))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1038 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1039 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1040
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1041 $comparisons.append($comparisons_bis)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1042 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1043 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1044 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1045 $comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1046 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1047 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1048
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1049 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1050 #if len($conditions) > 0:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1051 #if len($timepoints) > 1:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1052 #for $co in $conditions:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1053 #set $comparisons_bis = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1054 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1055 #set $sub_comparisons = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1056 $sub_comparisons.append(re.sub('"', '', str($co)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1057 $sub_comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1058 $comparisons_bis.append($sub_comparisons)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1059 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1060 $comparisons.append($comparisons_bis)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1061 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1062 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1063 #else
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1064 #for $tp in $timepoint:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1065 $comparisons.append(re.sub('"', '', str($tp)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1066 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1067 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1068 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1069 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1070 <token name="@INIT_TRANSCRIPTS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1071 #import re
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1072 #import os
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1073 #import subprocess
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1074 #set $transcripts = list()
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1075
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1076 #for $i, $s in enumerate($deg_list)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1077 #set $cpt = str($i+1)
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1078 $transcripts.append(re.sub('"', '', "DEG_comparison"+str($i+1)))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1079 #set $deg_one_values = os.fsdecode(subprocess.check_output('head -n1 ' + str($s.input) + '\| cut -f' + str($s.valuecol), shell=True))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1080 #set $deg_one_id = os.fsdecode(subprocess.check_output('head -n1 ' + str($s.input) + '\| cut -f' + str($s.idcol), shell=True))
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1081 #end for
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1082 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1083 <token name="@INIT_PATHWAYS@"><![CDATA[
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1084 #set $pathways = {}
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1085 #if $path_kegg_metabolites:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1086 #silent $pathways['metabolites']='pathways_kegg_metabolites'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1087 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1088 #if $path_kegg_transcripts:
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1089 #silent $pathways['transcripts']='pathways_kegg_transcripts'
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1090 #end if
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1091 ]]></token>
1ccbaa9510dc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit 3dba8748fbc8cc8e89ffc08e5febe0a0527a96a5 iuc parents: diff changeset	1092 </macros>

Mercurial > repos > iuc > dimet_differential_analysis

annotate macros.xml @ 1:c756cf333cd7 draft default tip