Mercurial > repos > iuc > dexseq

comparison dexseq_count.xml @ 9:40078037ca47 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit e785d126b23609208b055fb8902f3b9368e9b839
author iuc
date Sat, 28 Jul 2018 03:43:41 -0400
parents 0ccbed58b270
children 6f684b3b0a6d
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8:0ccbed58b270 9:40078037ca47
76 <param name="mode_select" value="prepare" /> 76 <param name="mode_select" value="prepare" />
77 <param name="gtffile" ftype="gff" value="original.gtf"/> 77 <param name="gtffile" ftype="gff" value="original.gtf"/>
78 <param name="aggregate" value="True"/> 78 <param name="aggregate" value="True"/>
79 <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/> 79 <output name="flattened_gtf_out" ftype="gtf" compare="sim_size" file="flattened.gtf"/>
80 </test> 80 </test>
81 <!-- Ensure count mode works -->
82 <test>
83 <param name="mode_select" value="count" />
84 <param name="bamfile" ftype="bam" value="in.bam" />
85 <param name="flattened_gtf_in" ftype="gff" value="flattened.gtf"/>
86 <output name="counts_file" ftype="tabular" file="out_count.tab"/>
87 </test>
81 </tests> 88 </tests>
82 89
83 <help><![CDATA[ 90 <help><![CDATA[
84 .. class:: infomark 91 .. class:: infomark
85 92