Mercurial > repos > iuc > dexseq

comparison dexseq.xml @ 1:36fe30ece23b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq commit e2ab82632ee80aa2347545b2f21235d851b8c36a-dirty
author iuc
date Fri, 25 Sep 2015 14:05:00 -0400
parents 276833129f97
children b19cb9385f28
comparison
equal deleted inserted replaced
0:276833129f97 1:36fe30ece23b
1 <tool id="dexseq" name="DEXSeq" version="1.0"> 1 <tool id="dexseq" name="DEXSeq" version="1.0">
2 <description>Determines differential exon usage from count tables</description> 2 <description>Determines differential exon usage from count tables</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.2.0">R</requirement>
5 <requirement type="package" version="1.12.14">cairo</requirement>
6 <requirement type="package" version="4.0.3">tiff</requirement>
7 <requirement type="package" version="1.14.2">dexseq</requirement> 4 <requirement type="package" version="1.14.2">dexseq</requirement>
8 </requirements> 5 </requirements>
9 <code file="dexseq_helper.py" /> 6 <code file="dexseq_helper.py" />
10 <command> 7 <command>
11 <![CDATA[ 8 <![CDATA[
12 mkdir ./html_out && 9 mkdir ./html_out &&
13 #import json 10 #import json
14 Rscript $__tool_directory__/dexseq.R 11 Rscript $__tool_directory__/dexseq.R
15 -o "$dexseq_out" 12 -o "$dexseq_out"
16 -p 6 13 -p 6
17 #set $temp_factor_names = list() 14 #set $temp_factor_names = list()