Mercurial > repos > iuc > deseq2

diff macros.xml @ 45:702bdf59d6c8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/deseq2 commit 2bcb448af8311320be0a970be37aa8ea4eed66b9
author iuc
date Fri, 19 Dec 2025 08:09:31 +0000
parents 1cb33de18af5
children
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--- a/macros.xml	Tue Dec 09 17:43:58 2025 +0000
+++ b/macros.xml	Fri Dec 19 08:09:31 2025 +0000
@@ -18,6 +18,10 @@
             </repeat>
         </repeat>
     </xml>
+    <xml name="reference_target_levels">
+        <param name="reference_level" type="text" label="Reference level for primary factor" help="Specify the reference level for the primary factor. If left blank, the first encountered level of the primary factor will be used as reference." optional="true"/>
+        <param name="target_level" type="text" label="Target level for primary factor" help="Specify the target level for the primary factor. If left blank, all levels will be compared against the primary factor." optional="true"/>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@DESEQ2_VERSION@">bioconductor-deseq2</requirement>
@@ -30,6 +34,7 @@
             <requirement type="package" version="3.1.3">r-gplots</requirement>
             <requirement type="package" version="1.0.12">r-pheatmap</requirement>
             <requirement type="package" version="0.2.21">r-rjson</requirement>
+            <requirement type="package" version="0.1_3">r-base64enc</requirement>
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">2.11.40.8</token>