Mercurial > repos > iuc > deseq2

diff deseq2.xml @ 5:4ba2afa87fce draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 80abc96e451fb55175aedf74bf90a9196172d4d2-dirty
author iuc
date Fri, 04 Sep 2015 08:26:02 -0400
parents 1ae1da9a5e66
children 982bd8bfa44c
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--- a/deseq2.xml	Fri Sep 04 07:20:33 2015 -0400
+++ b/deseq2.xml	Fri Sep 04 08:26:02 2015 -0400
@@ -3,6 +3,7 @@
     <requirements>
         <!-- odering is crucial, otherwise R will override the ENV variables from deseq2 -->
         <requirement type="package" version="3.2.1">R</requirement>
+        <requirement type="package" version="3.10.2">atlas</requirement>
         <requirement type="package" version="1.8.1">deseq2</requirement>
     </requirements>
     <version_command>
@@ -14,7 +15,7 @@
     <command interpreter="Rscript">
     <![CDATA[
         #import json
-        deseq2.R
+        \$DESEQ2_ROOT_PATH/inst/script/deseq2.R
             -o "$deseq_out"
             #if $pdf:
                 -p "$plots"