Mercurial > repos > iuc > deseq2

diff deseq2.xml @ 3:1ae1da9a5e66 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 521ea70d49fee701db4d832823644c8c3050f8f2-dirty
author iuc
date Fri, 04 Sep 2015 07:15:37 -0400
parents 9c706d3721ab
children 4ba2afa87fce
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--- a/deseq2.xml	Fri Sep 04 07:11:53 2015 -0400
+++ b/deseq2.xml	Fri Sep 04 07:15:37 2015 -0400
@@ -2,12 +2,12 @@
     <description>Determines differentially expressed features from count tables</description>
     <requirements>
         <!-- odering is crucial, otherwise R will override the ENV variables from deseq2 -->
-        <requirement type="package" version="3.1.0">R</requirement>
+        <requirement type="package" version="3.2.1">R</requirement>
         <requirement type="package" version="1.8.1">deseq2</requirement>
     </requirements>
     <version_command>
     <![CDATA[
-        echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2) &&
+        echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2) ;
         cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
     ]]>
     </version_command>