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comparison macros.xml @ 45:702bdf59d6c8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/deseq2 commit 2bcb448af8311320be0a970be37aa8ea4eed66b9
author iuc
date Fri, 19 Dec 2025 08:09:31 +0000
parents 1cb33de18af5
children
comparison
equal deleted inserted replaced
44:1cb33de18af5 45:702bdf59d6c8
16 </param> 16 </param>
17 <yield/> 17 <yield/>
18 </repeat> 18 </repeat>
19 </repeat> 19 </repeat>
20 </xml> 20 </xml>
21 <xml name="reference_target_levels">
22 <param name="reference_level" type="text" label="Reference level for primary factor" help="Specify the reference level for the primary factor. If left blank, the first encountered level of the primary factor will be used as reference." optional="true"/>
23 <param name="target_level" type="text" label="Target level for primary factor" help="Specify the target level for the primary factor. If left blank, all levels will be compared against the primary factor." optional="true"/>
24 </xml>
21 <xml name="requirements"> 25 <xml name="requirements">
22 <requirements> 26 <requirements>
23 <requirement type="package" version="@DESEQ2_VERSION@">bioconductor-deseq2</requirement> 27 <requirement type="package" version="@DESEQ2_VERSION@">bioconductor-deseq2</requirement>
24 <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 --> 28 <!-- Optional dependency of tximport, needed to import kallisto results https://github.com/galaxyproject/usegalaxy-playbook/issues/161 -->
25 <requirement type="package" version="2.44.0">bioconductor-rhdf5</requirement> 29 <requirement type="package" version="2.44.0">bioconductor-rhdf5</requirement>
28 <requirement type="package" version="1.20.3">r-getopt</requirement> 32 <requirement type="package" version="1.20.3">r-getopt</requirement>
29 <requirement type="package" version="0.9.3">r-ggrepel</requirement> 33 <requirement type="package" version="0.9.3">r-ggrepel</requirement>
30 <requirement type="package" version="3.1.3">r-gplots</requirement> 34 <requirement type="package" version="3.1.3">r-gplots</requirement>
31 <requirement type="package" version="1.0.12">r-pheatmap</requirement> 35 <requirement type="package" version="1.0.12">r-pheatmap</requirement>
32 <requirement type="package" version="0.2.21">r-rjson</requirement> 36 <requirement type="package" version="0.2.21">r-rjson</requirement>
37 <requirement type="package" version="0.1_3">r-base64enc</requirement>
33 </requirements> 38 </requirements>
34 </xml> 39 </xml>
35 <token name="@TOOL_VERSION@">2.11.40.8</token> 40 <token name="@TOOL_VERSION@">2.11.40.8</token>
36 <token name="@DESEQ2_VERSION@">1.40.2</token> 41 <token name="@DESEQ2_VERSION@">1.40.2</token>
37 <token name="@VERSION_SUFFIX@">1</token> 42 <token name="@VERSION_SUFFIX@">1</token>