Mercurial > repos > iuc > deseq2

comparison deseq2.xml @ 38:cf2c5e8ea088 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 0b502ee6bfa3e861c8678cabfeb670dc8dfe9519"
author iuc
date Fri, 08 Jan 2021 20:29:23 +0000
parents 951876579237
children b30a443484ab
comparison
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37:951876579237 38:cf2c5e8ea088
38 ln -s '$tximport.mapping_format.gtf_file' mapping.gff && 38 ln -s '$tximport.mapping_format.gtf_file' mapping.gff &&
39 #else: 39 #else:
40 ln -s '$tximport.mapping_format.tabular_file' mapping.txt && 40 ln -s '$tximport.mapping_format.tabular_file' mapping.txt &&
41 #end if 41 #end if
42 #end if 42 #end if
43
44 ## This is needed for Pulsar to transfer the file
45 cat '$__tool_directory__/get_deseq_dataset.R' > /dev/null &&
43 46
44 #import json 47 #import json
45 #import os 48 #import os
46 Rscript '${__tool_directory__}/deseq2.R' 49 Rscript '${__tool_directory__}/deseq2.R'
47 --cores \${GALAXY_SLOTS:-1} 50 --cores \${GALAXY_SLOTS:-1}