Mercurial > repos > iuc > delly_lr
diff lr.xml @ 5:0564602cd4df draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit 57b50253f326baf18bfbf417d8c788b4f5ba66e6
| author | iuc |
|---|---|
| date | Mon, 27 Jun 2022 18:14:26 +0000 |
| parents | 0e56998aebc6 |
| children | d00d96187fd2 |
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--- a/lr.xml Tue Dec 14 19:03:14 2021 +0000 +++ b/lr.xml Mon Jun 27 18:14:26 2022 +0000 @@ -10,13 +10,13 @@ <command detect_errors="exit_code"><![CDATA[ ## initialize @BAM@ - +@FASTA@ ## run delly lr ## generic options --svtype $generic.svtype --technology $generic.technology ---genome '$generic.genome' +--genome genome.fa #if $generic.exclude --exclude '$generic.exclude' #end if @@ -99,12 +99,12 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1184" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output> @@ -120,7 +120,7 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1189" delta="10"/> + <has_size value="1131" delta="10"/> </assert_contents> </output> <output name="out_log"> @@ -130,7 +130,7 @@ </output> <output name="out_vcf"> <assert_contents> - <has_size value="3667" delta="10"/> + <has_n_lines valuen="42"/> </assert_contents> </output> </test> @@ -146,7 +146,7 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1186" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> <output name="out_dump"> @@ -161,7 +161,7 @@ </output> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> </assert_contents> </output> </test> @@ -195,7 +195,7 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1182" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> <output name="out_dump"> @@ -210,7 +210,7 @@ </output> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output> @@ -227,7 +227,7 @@ </section> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output> @@ -244,7 +244,7 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1182" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> </test>