Mercurial > repos > iuc > delly_call
diff call.xml @ 5:29f28384af45 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit 57b50253f326baf18bfbf417d8c788b4f5ba66e6
| author | iuc |
|---|---|
| date | Mon, 27 Jun 2022 18:13:53 +0000 |
| parents | f0a5257823ba |
| children |
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--- a/call.xml Tue Dec 14 19:02:43 2021 +0000 +++ b/call.xml Mon Jun 27 18:13:53 2022 +0000 @@ -10,12 +10,12 @@ <command detect_errors="exit_code"><![CDATA[ ## initialize @BAM@ - +@FASTA@ ## run delly call ## generic options --svtype $generic.svtype ---genome '$generic.genome' +--genome genome.fa #if $generic.exclude --exclude '$generic.exclude' #end if @@ -95,12 +95,12 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1184" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output> @@ -185,7 +185,7 @@ </section> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output> @@ -202,7 +202,7 @@ </section> <output name="out_bcf"> <assert_contents> - <has_size value="1183" delta="10"/> + <has_size value="1127" delta="10"/> </assert_contents> </output> </test> @@ -250,7 +250,7 @@ </section> <output name="out_vcf"> <assert_contents> - <has_size value="3661" delta="10"/> + <has_n_lines n="46"/> <has_line line="#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	normal"/> </assert_contents> </output>