# HG changeset patch
# User iuc
# Date 1633074364 0
# Node ID 97cc305f6afe279d939273719113a0a9c8800b58
# Parent  2036bbf304d63f90807b3bf172fcb38c26ad6459
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit ce3024e2098c50a93ea8a7fc120a40a570fd0c53"

diff -r 2036bbf304d6 -r 97cc305f6afe deepvariant.xml
--- a/deepvariant.xml	Mon Sep 06 17:33:36 2021 +0000
+++ b/deepvariant.xml	Fri Oct 01 07:46:04 2021 +0000
@@ -31,7 +31,7 @@
         #else if $regions_conditional.regions_option == 'bed'
             --regions region.bed
         #end if
-        --call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%.
+        ##--call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%.
         --num_shards=\${GALAXY_SLOTS:-2}
         && gunzip './output.vcf.gz'
         #if $output_gvcf
@@ -56,7 +56,7 @@
                 <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" />
             </when>
         </conditional>
-        <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads files for child and one or two parents in BAM format. The reads must be aligned to the reference genome" />
+        <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" />
         <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling">
             <option value="WGS">WGS: Illumina whole genome sequencing</option>
             <option value="WES">WES: Illumina whole exome sequencing</option>
diff -r 2036bbf304d6 -r 97cc305f6afe macros.xml
--- a/macros.xml	Mon Sep 06 17:33:36 2021 +0000
+++ b/macros.xml	Fri Oct 01 07:46:04 2021 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.2.0</token>
-    <token name="@SUFFIX_VERSION@">0</token>
+    <token name="@SUFFIX_VERSION@">1</token>
     <xml name="edam_ontology">
         <edam_topics>                                                                                  
             <edam_topic>topic_0199</edam_topic>