Mercurial > repos > iuc > datamash_ops

annotate macros.xml @ 11:69b9574c1834 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
author iuc
date Tue, 18 Nov 2025 22:07:55 +0000
parents 67d9cf45e802
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
1 <macros>
11
69b9574c1834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
iuc
parents: 10
diff changeset
2 <token name="@TOOL_VERSION@">1.9</token>
10
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
3 <token name="@VERSION_SUFFIX@">0</token>
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
4 <token name="@PROFILE@">22.01</token>
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
5 <xml name="inputs_outputs">
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
6 <inputs>
8
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
7 <param name="in_file" type="data" format="tabular,csv,tsv" label="Input tabular dataset" help="" />
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
8 <yield />
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
9 </inputs>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
10 <outputs>
8
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
11 <data name="out_file" format_source="in_file" label="${tool.name} on ${on_string}" />
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
12 </outputs>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
13 </xml>
8
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
14 <token name="@FIELD_SEPARATOR@"><![CDATA[
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
15 #if $in_file.ext == 'csv'
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
16 -t ,
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
17 #end if
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
18 ]]></token>
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
19 <xml name="requirements">
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
20 <requirements>
8
f11dedb74b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 206ac70388ea11b168366f1e30bb44157e371c6e"
iuc
parents: 7
diff changeset
21 <requirement type="package" version="@TOOL_VERSION@">datamash</requirement>
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
22 </requirements>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
23 </xml>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
24 <xml name="stdio">
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
25 <stdio>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
26 <exit_code description="Error" level="fatal" range="1:" />
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
27 </stdio>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
28 </xml>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
29 <token name="@HELP_FOOTER@">
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
30 -----
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
31
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
32 **GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website.
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
33
11
69b9574c1834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
iuc
parents: 10
diff changeset
34 For more details about supported statistical operations, see https://www.gnu.org/software/datamash/download/
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
35
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
36 For more details about supported statistical operations, see Datamash_ website.
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
37
11
69b9574c1834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
iuc
parents: 10
diff changeset
38 .. _Datamash: https://www.gnu.org/software/datamash/
69b9574c1834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
iuc
parents: 10
diff changeset
39
0
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
40 </token>
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
41 <token name="@HELP_HEADER@">
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
42 .. class:: infomark
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
43
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
44 **TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation->Convert* to convert it to **Tabular** type.
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
45
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
46 -----
2d03f8df7806 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 1fa5e1a5cfac88256d484ec20c35fc319e6ceb3b
iuc
parents:
diff changeset
47 </token>
10
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
48 <xml name="citation">
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
49 <citations>
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
50 <citation type="bibtex">
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
51 @ONLINE{datamash,
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
52 title = {GNU Datamash},
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
53 url = {https://www.gnu.org/software/datamash/}
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
54 }
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
55 </citation>
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
56 </citations>
67d9cf45e802 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 9edd054251bc74685d627360bb0fbe8ea60fa6a2
iuc
parents: 9
diff changeset
57 </xml>
11
69b9574c1834 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/datamash commit 178914e2f45c9d80bd4d88377c634593246b9f36
iuc
parents: 10
diff changeset
58 </macros>