Mercurial > repos > iuc > data_manager_vsnp_dnaprints

annotate data_manager/vsnp_dnaprints_fetcher.xml @ 0:059f4413f5e4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
author iuc
date Fri, 08 May 2020 19:22:42 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
2 <tool id="vsnp_dnaprints_fetcher" name="vSNP DNAprints data manager" tool_type="manage_data" profile="18.09" version="0.0.8">
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
3 <description>Download vSNP DNAprints files</description>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
4 <requirements>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
5 <requirement type="package" version="3.7">python</requirement>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
6 </requirements>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
8 python '$__tool_directory__/vsnp_dnaprints_fetcher.py'
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
9 --dbkey '${all_fasta_source.fields.dbkey}'
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
10 --name '${all_fasta_source.fields.name}'
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
11 --out_file '$out_file'
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
12 --url '$url'
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
13 ]]>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
14 </command>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
15 <inputs>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
16 <param name="all_fasta_source" type="select" label="FASTA reference">
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
17 <options from_data_table="all_fasta"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
18 </param>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
19 <param name="url" type="text" value="" label="URL to download the DNAprints file associated with the selected FASTA reference" optional="False"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
20 </inputs>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
21 <outputs>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
22 <data name="out_file" format="data_manager_json"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
23 </outputs>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
24 <tests>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
25 <test>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
26 <param name="all_fasta_source" value="AF2122"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
27 <param name="url" value="https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Mycobacterium_AF2122/NC_002945v4.yml"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
28 <output name="out_file" value="vsnp_dnaprints.json" compare="contains"/>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
29 </test>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
30 </tests>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
31 <help><![CDATA[
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
32 This tool fetches a vSNP DNAprints file associated with each supported genome reference to populate the vsnp_dnaprints data table. The dbkey and name fields
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
33 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP DNAprints files are available in GitHub
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
34 at https://github.com/USDA-VS/vSNP_reference_options.
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
35
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
36 * **Mycobacterium bovis AF2122/97**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
37
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
38 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Mycobacterium_AF2122/NC_002945v4.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
39
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
40 * **Brucella abortus bv. 1 str. 9-941**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
41
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
42 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_abortus1/NC_006932-NC_006933.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
43
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
44 * **Brucella abortus strain BER**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
45
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
46 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_abortus3/NZ_CP007682-NZ_CP007683.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
47
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
48 * **Brucella canis ATCC 23365**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
49
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
50 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_canis/NC_010103-NC_010104.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
51
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
52 * **Brucella ceti TE10759-12**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
53
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
54 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_ceti2/NC_022905-NC_022906.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
55
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
56 * **Brucella melitensis bv. 1 str. 16M**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
57
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
58 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv1/NC_003317-NC_003318.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
59
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
60 * **Brucella melitensis bv. 3 str. Ether**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
61
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
62 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv3/NZ_CP007760-NZ_CP007761.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
63
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
64 * **Brucella melitensis BwIM_SOM_36b**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
65
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
66 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv1b/NZ_CP018508-NZ_CP018509.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
67
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
68 * **Brucella melitensis ATCC 23457**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
69
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
70 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_melitensis-bv2/NC_012441-NC_012442.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
71
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
72 * **Brucella ovis ATCC 25840**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
73
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
74 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_ovis/NC_009505-NC_009504.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
75
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
76 * **Brucella suis 1330**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
77
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
78 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis1/NC_017251-NC_017250.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
79
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
80 * **Mycobacterium tuberculosis H37Rv**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
81
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
82 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Mycobacterium_H37/NC_000962.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
83
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
84 * **Mycobacterium avium subsp. paratuberculosis strain Telford**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
85
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
86 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/para-CP033688/CP033688.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
87
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
88 * **Mycobacterium avium subsp. paratuberculosis K-10**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
89
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
90 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/para-NC002944/NC_002944.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
91
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
92 * **Brucella suis ATCC 23445**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
93
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
94 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis2/NC_010169-NC_010167.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
95
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
96 * **Brucella suis bv. 3 str. 686**
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
97
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
98 * **DNAprints file** https://raw.githubusercontent.com/USDA-VS/vSNP_reference_options/master/Brucella_suis3/NZ_CP007719-NZ_CP007718.yml
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
99
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
100 ]]></help>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
101 <citations>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
102 </citations>
059f4413f5e4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_vsnp_dnaprints commit 91c7f7c66a4dcbf3d0074f3a49a1a536aea70663"
iuc
parents:
diff changeset
103 </tool>