Mercurial > repos > iuc > data_manager_star_index_builder

comparison data_manager_conf.xml @ 8:d2f4bfcf269a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 20:32:41 +0000
parents 54cddd903437
children 5750f6d0d369
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7:9a231bb19a3b 8:d2f4bfcf269a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder"> 3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.6">
4 <data_table name="rnastar_index2_versioned"> 4 <data_table name="rnastar_index2_versioned">
5 <output> 5 <output>
6 <column name="value" /> 6 <column name="value" />
7 <column name="dbkey" /> 7 <column name="dbkey" />
8 <column name="name" /> 8 <column name="name" />
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source> 11 <!-- <source>${path}</source>
12 out_file.extra_files_path is used as base by default 12 out_file.extra_files_path is used as base by default
13 if no source, eg for type=directory, then refers to base 13 if no source, eg for type=directory, then refers to base
14 --> 14 -->
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}</target> 15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}/${path}</target>
16 </move> 16 </move>
17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}</value_translation> 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}/${path}</value_translation>
18 <value_translation type="function">abspath</value_translation> 18 <value_translation type="function">abspath</value_translation>
19 </column> 19 </column>
20 <column name="with_gene_model" /> 20 <column name="with_gene_model" />
21 <column name="version" /> 21 <column name="version" />
22 </output> 22 </output>