Mercurial > repos > iuc > data_manager_star_index_builder

comparison data_manager_conf.xml @ 6:54cddd903437 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit b3b5e4587d85ab790b78a35d851f57f34627dc0b
author iuc
date Thu, 11 Jul 2019 11:35:38 -0400
parents 613b120db55c
children d2f4bfcf269a
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5:1bd6dc820044 6:54cddd903437
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder" version="0.0.3"> 3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder">
4 <data_table name="rnastar_index2"> 4 <data_table name="rnastar_index2_versioned">
5 <output> 5 <output>
6 <column name="value" /> 6 <column name="value" />
7 <column name="dbkey" /> 7 <column name="dbkey" />
8 <column name="name" /> 8 <column name="name" />
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source> 11 <!-- <source>${path}</source>
12 out_file.extra_files_path is used as base by default 12 out_file.extra_files_path is used as base by default
13 if no source, eg for type=directory, then refers to base 13 if no source, eg for type=directory, then refers to base
14 --> 14 -->
15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/rnastar_index2/${value}</target> 15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}</target>
16 </move> 16 </move>
17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/rnastar_index2/${value}/${path}</value_translation> 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}</value_translation>
18 <value_translation type="function">abspath</value_translation> 18 <value_translation type="function">abspath</value_translation>
19 </column> 19 </column>
20 <column name="with-gtf" /> 20 <column name="with_gene_model" />
21 <column name="version" />
21 </output> 22 </output>
22 </data_table> 23 </data_table>
23 </data_manager> 24 </data_manager>
24 </data_managers> 25 </data_managers>