Mercurial > repos > iuc > data_manager_snpsift_dbnsfp

comparison data_manager/data_manager_snpsift_dbnsfp.xml @ 6:0a68ef0303c5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpsift_dbnsfp commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 20:32:17 +0000
parents 5ebc15b0bf00
children
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5:2cd22c2881e3 6:0a68ef0303c5
1 <tool id="data_manager_snpsift_dbnsfp" name="SnpSift dbNSFP" version="4.1.0" tool_type="manage_data"> 1 <tool id="data_manager_snpsift_dbnsfp" name="SnpSift dbNSFP" version="4.1.1" tool_type="manage_data" profile="19.05">
2 <description>Install a dbNSFP variant annotation database</description> 2 <description>Install a dbNSFP variant annotation database</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.8.3">pysam</requirement> 4 <requirement type="package" version="0.8.3">pysam</requirement>
5 <requirement type="package" version="2.7">python</requirement>
5 </requirements> 6 </requirements>
6 <stdio> 7 <stdio>
7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 8 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
8 <exit_code range="1:" level="fatal" description="Error" /> 9 <exit_code range="1:" level="fatal" description="Error" />
9 </stdio> 10 </stdio>
10 <command interpreter="python"> 11 <command>
11 #import re 12 #import re
12 data_manager_snpsift_dbnsfp.py 13 python '$__tool_directory__/data_manager_snpsift_dbnsfp.py'
13 #if $db.src == 'softgenetics': 14 #if $db.src == 'softgenetics':
14 --softgenetics "$db.softgenetics_name" 15 --softgenetics "$db.softgenetics_name"
15 #elif $db.src == 'history': 16 #elif $db.src == 'history':
16 #if $db.snpsiftdbnsfp.is_of_type('snpsiftdbnsfp'): 17 #if $db.snpsiftdbnsfp.is_of_type('snpsiftdbnsfp'):
17 #import os.path 18 #import os.path