Mercurial > repos > iuc > data_manager_snpeff
view data_manager/snpEff_macros.xml @ 2:c54b7693456f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit de422632b9310905f8e9d44faee9ff768752968f
| author | iuc |
|---|---|
| date | Mon, 31 Oct 2016 08:11:53 -0400 |
| parents | |
| children |
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<macros> <xml name="requirements"> <requirements> <requirement type="package" version="4.1">snpEff</requirement> </requirements> </xml> <xml name="stdio"> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> </xml> <token name="@CONDA_SNPEFF_JAR_PATH@">if [ -z "\$SNPEFF_JAR_PATH" ]; then export SNPEFF_JAR_PATH=\$(dirname \$(readlink -e \$(which snpEff))); fi</token> <xml name="version_command"> <version_command><![CDATA[ if [ -z "$SNPEFF_JAR_PATH" ]; then export SNPEFF_JAR_PATH=$(dirname $(readlink -e $(which snpEff))); fi && java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version ]]></version_command> </xml> <token name="@WRAPPER_VERSION@">4.1</token> <xml name="citations"> <citations> <citation type="doi">10.4161/fly.19695</citation> <yield /> </citations> </xml> </macros>
