Mercurial > repos > iuc > data_manager_snpeff

comparison data_manager/data_manager_snpEff_download.py @ 7:71821eb11274 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_snpeff commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author iuc
date Tue, 30 Oct 2018 18:38:43 -0400
parents a6e6e8415b7f
children fbb459120c29
comparison
equal deleted inserted replaced
6:a6e6e8415b7f 7:71821eb11274
61 if return_code != 255: 61 if return_code != 255:
62 sys.exit( return_code ) 62 sys.exit( return_code )
63 stderr_fh.close() 63 stderr_fh.close()
64 fh = open(stderr_path, 'r') 64 fh = open(stderr_path, 'r')
65 for line in fh: 65 for line in fh:
66 m = re.match('^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line) 66 m = re.match(r'^[Ss]npEff version (SnpEff)\s*(\d+\.\d+).*$', line)
67 if m: 67 if m:
68 snpeff_version = m.groups()[0] + m.groups()[1] 68 snpeff_version = m.groups()[0] + m.groups()[1]
69 break 69 break
70 fh.close() 70 fh.close()
71 return snpeff_version 71 return snpeff_version