Mercurial > repos > iuc > data_manager_selection_background

comparison data_manager/data_manager_selection_background.xml @ 0:4a643ee2e4b8 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_selection_background commit af3bfbbd3f1236bf96a25bcb8483f2889295ec0c"
author iuc
date Fri, 20 Aug 2021 21:01:16 +0000
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children f6d4b709b0bf
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-1:000000000000 0:4a643ee2e4b8
1 <?xml version="1.0"?>
2 <tool id="data_manager_selection_background" name="Add background sequences" tool_type="manage_data" version="1.0.1">
3 <description>for selection analysis</description>
4 <command detect_errors="exit_code">
5 <![CDATA[
6 python '$__tool_directory__/data_manager_selection_background.py' --out '$selection_background_json'
7 --dbkey '${dbkey}'
8 --label '${label}'
9 #if $data_source.source_selector == 'history':
10 --dataset '$data_source.dataset'
11 #else:
12 --uri '$data_source.uri'
13 #end if
14 ]]>
15 </command>
16 <inputs>
17 <param argument="--dbkey" type="text" label="ID for this entry" help="Enter a unique identifier, or leave blank for a randomly generated UUID" />
18 <param argument="--label" type="text" label="Label for this entry" help="This will be displayed in the list of available backgrounds" />
19 <conditional name="data_source">
20 <param name="source_selector" type="select" label="Source for the data">
21 <option value="uri">URL download</option>
22 <option value="history">Use a history dataset</option>
23 </param>
24 <when value="uri">
25 <param argument="--uri" type="text" label="URI for the sequences" />
26 </when>
27 <when value="history">
28 <param argument="--dataset" type="data" format="fasta" />
29 </when>
30 </conditional>
31 </inputs>
32 <outputs>
33 <data format="data_manager_json" name="selection_background_json" />
34 </outputs>
35 <tests>
36 <test>
37 <param name="dbkey" value="CoV2-ORF6" />
38 <param name="label" value="SARS-CoV-2: ORF6" />
39 <param name="source_selector" value="history" />
40 <param name="dataset" value="selection-in1.fa" />
41 <output name="out_file" file="selection-out1.json" />
42 </test>
43 </tests>
44 <help>
45 </help>
46 </tool>