Mercurial > repos > iuc > data_manager_salmon_index_builder

diff data_manager/salmon_index_builder.xml @ 7:0b41709046cf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_salmon_index_builder commit 3660c0d9ab58164c3966fbec969400ec19cb4000
author iuc
date Wed, 22 Oct 2025 14:38:12 +0000
parents befb1da9de9a
children e1bbef81b470
line wrap: on
line diff
--- a/data_manager/salmon_index_builder.xml	Wed Oct 22 09:01:03 2025 +0000
+++ b/data_manager/salmon_index_builder.xml	Wed Oct 22 14:38:12 2025 +0000
@@ -36,10 +36,10 @@
     <configfiles>
         <configfile name="dmjson"><![CDATA[{
 #if str($sequence_id).strip() == ""
-    #set sequence_id = $all_fasta_source.fields.dbkey
+    #set sequence_id = $transcriptome.fields.value
 #end if
 #if str($sequence_name).strip() == ""
-    #set sequence_name = $all_fasta_source.fields.dbkey
+    #set sequence_name = $transcriptome.fields.name
 #end if
 
   "data_tables":{