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comparison data_manager_conf.xml @ 0:6160cc7447fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit c1b936b54b7133106b3181df1e104986613a5bea
author iuc
date Mon, 06 Nov 2017 06:21:32 -0500
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-1:000000000000 0:6160cc7447fa
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data">
4 <data_table name="mothur_aligndb">
5 <output>
6 <column name="name" />
7 <column name="value" output_ref="out_file" >
8 <move type="file">
9 <source>${value}</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target>
11 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation>
14 </column>
15 </output>
16 </data_table>
17 <data_table name="mothur_lookup">
18 <output>
19 <column name="name" />
20 <column name="value" output_ref="out_file" >
21 <move type="file">
22 <source>${value}</source>
23 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target>
24 </move>
25 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation>
26 <value_translation type="function">abspath</value_translation>
27 </column>
28 </output>
29 </data_table>
30 <data_table name="mothur_map">
31 <output>
32 <column name="name" />
33 <column name="value" output_ref="out_file" >
34 <move type="file">
35 <source>${value}</source>
36 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target>
37 </move>
38 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation>
39 <value_translation type="function">abspath</value_translation>
40 </column>
41 </output>
42 </data_table>
43 <data_table name="mothur_taxonomy">
44 <output>
45 <column name="name" />
46 <column name="value" output_ref="out_file" >
47 <move type="file">
48 <source>${value}</source>
49 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target>
50 </move>
51 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation>
52 <value_translation type="function">abspath</value_translation>
53 </column>
54 </output>
55 </data_table>
56 </data_manager>
57 </data_managers>