Mercurial > repos > iuc > data_manager_mitos
diff data_manager/data_manager.py @ 1:58bcd38cecb6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mitos commit 2db6284f6077d80d05227180a809b921b4975c60"
| author | iuc |
|---|---|
| date | Sun, 22 Nov 2020 18:02:48 +0000 |
| parents | c25855a79671 |
| children | 5408a9225788 |
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--- a/data_manager/data_manager.py Fri Mar 27 20:34:48 2020 +0000 +++ b/data_manager/data_manager.py Sun Nov 22 18:02:48 2020 +0000 @@ -12,7 +12,7 @@ ZENODO = { "mitos": "2683856", - "mitos2": "3685310" + "mitos2": "4284483" } NAMES = { "mitos1-refdata": "RefSeq39 + MiTFi tRNA models", @@ -71,14 +71,14 @@ data_manager_entry['path'] = path data_manager_json = dict(data_tables=dict(mitos=data_manager_entry)) - with open(outjson) as f: - params = json.loads(f.read()) + with open(outjson) as fh: + params = json.load(fh) target_directory = params['output_data'][0]['extra_files_path'] os.mkdir(target_directory) # output_path = os.path.abspath(os.path.join(os.getcwd(), 'mitos')) shutil.move(os.path.join(workdir, path), target_directory) with open(outjson, 'w') as fh: - fh.write(json.dumps(data_manager_json, sort_keys=True)) + json.dump(data_manager_json, fh, sort_keys=True) if __name__ == '__main__':